Building on summer
(from freebsd)
2024-12-17 18:20.15 ---> using "77d5fe31836124b4684d554707425c4fde23f9ef3df0a804431a47419573778d" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (env CI true)
/: (env OPAM_HEALTH_CHECK_CI true)
/: (run (shell "sudo ln -f /usr/local/bin/opam-dev /usr/local/bin/opam"))
2024-12-17 18:20.16 ---> using "7afea9128a2830beedf345f0b46af5484579ebada7710165f445c6c5b18563a9" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q 4c55f2acaf27f0a15996d4dc0dd13e0b2e5f3cc1"))
2024-12-17 18:20.16 ---> using "d701441ac9189e76e6aabd2fd8f272b1b496c95092ee71a867994fa042b099bd" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare ~/opam-repository"))
No configuration file found, using built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
~/.profile is already up-to-date.
[NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc.
2024-12-17 18:20.16 ---> using "b9fb679fd35ef44bcfc79e6d6bda1d7df4c7a62f3e55ae0f5e83fdf081890ebd" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam switch create --repositories=default '5.2.0' 'ocaml-base-compiler.5.2.0'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "5.2.0"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved ocaml-config.3 (cached)
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> installed host-arch-x86_64.1
-> installed host-system-other.1
-> installed ocaml-options-vanilla.1
-> retrieved ocaml-base-compiler.5.2.0 (cached)
-> installed ocaml-base-compiler.5.2.0
-> installed ocaml-config.3
-> installed ocaml.5.2.0
-> installed base-domains.base
-> installed base-nnp.base
Done.
# To update the current shell environment, run: eval $(opam env --switch=5.2.0)
2024-12-17 18:20.17 ---> using "43207f3fada0dee8b2d293185d894075662416a518a256b1895ed46a16b8ba5e" from cache
/: (run (network host)
(shell "opam update --depexts"))
[WARNING] Unknown update command for bsd, skipping system update
2024-12-17 18:20.17 ---> using "f8d4ba41e8ca3e03295d6c357ddb76fd7f7647e9b633e493960a24aff0c86428" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "\
\nopam remove -y \"orxgboost.1.2.0\"\
\nopam install -vy \"orxgboost.1.2.0\"\
\nres=$?\
\nif [ $res = 31 ]; then\
\n if opam show -f x-ci-accept-failures: \"orxgboost.1.2.0\" | grep -q '\"freebsd\"'; then\
\n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
\n exit 69\
\n fi\
\nfi\
\n\
\n\
\nexit $res\
\n"))
[NOTE] orxgboost.1.2.0 is not installed.
Nothing to do.
The following actions will be performed:
=== install 3 packages
- install conf-r 1.0.0 [required by orxgboost]
- install dune 3.17.0 [required by orxgboost]
- install orxgboost 1.2.0
The following system packages will first need to be installed:
math/R
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run pkg to install them (may need root/sudo access)
2. Display the recommended pkg command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/local/bin/sudo "pkg" "install" "-y" "math/R"
- Updating FreeBSD repository catalogue...
- [summer] Fetching data.pkg: .....
- ..... done
- Processing entries:
- ..
- .
- ..
- .
- .
- .
- .. done
- FreeBSD repository update completed. 35568 packages processed.
- All repositories are up to date.
- The following 68 package(s) will be affected (of 0 checked):
-
- New packages to be INSTALLED:
- R: 4.4.1
- avahi-app: 0.8_2
- binutils: 2.43.1,1
- brotli: 1.1.0,1
- cairo: 1.17.4_2,3
- cmake-core: 3.30.5
- cups: 2.4.11
- dbus: 1.14.10_5,1
- dbus-glib: 0.112_1
- fontconfig: 2.15.0_3,1
- freetype2: 2.13.3
- fribidi: 1.0.15
- gcc13: 13.3.0
- gdbm: 1.24
- ghostscript10: 10.04.0
- glib: 2.80.5,2
- gmp: 6.3.0
- gnome_subr: 1.0
- gnutls: 3.8.7.1
- graphite2: 1.3.14
- harfbuzz: 10.0.1
- icu: 74.2_1,1
- jbig2dec: 0.20_1
- jbigkit: 2.1_3
- jpeg-turbo: 3.0.4
- jsoncpp: 1.9.6_1
- lcms2: 2.16_2
- lerc: 4.0.0
- libICE: 1.1.1,1
- libSM: 1.2.4,1
- libX11: 1.8.9,1
- libXScrnSaver: 1.2.4_1
- libXau: 1.0.11
- libXdmcp: 1.1.5
- libXext: 1.3.6,1
- libXft: 2.3.8
- libXmu: 1.1.4,1
- libXrender: 0.9.11
- libXt: 1.3.0,1
- libdaemon: 0.14_1
- libdatrie: 0.2.13_2
- libdeflate: 1.22
- libevent: 2.1.12
- libfontenc: 1.1.8
- libglvnd: 1.7.0
- libidn: 1.42
- libpaper: 1.1.28_1
- libtasn1: 4.19.0_1
- libthai: 0.1.29_1
- libuv: 1.49.0
- libxcb: 1.17.0
- mkfontscale: 1.2.3
- mpc: 1.3.1_1
- mpfr: 4.2.1,1
- nettle: 3.10_1
- openjpeg: 2.5.2_1
- p11-kit: 0.25.5
- pango: 1.52.2_1
- pixman: 0.42.2
- png: 1.6.44
- poppler-data: 0.4.12
- py311-packaging: 24.1
- rhash: 1.4.4_1
- tcl86: 8.6.15_2
- tiff: 4.6.0
- tk86: 8.6.15
- urw-base35-fonts: 20200910
- xorgproto: 2024.1
-
- Number of packages to be installed: 68
-
- The process will require 857 MiB more space.
- 223 MiB to be downloaded.
- [summer] [1/68] Fetching png-1.6.44.pkg: .......... done
- [summer] [2/68] Fetching libxcb-1.17.0.pkg: .......... done
- [summer] [3/68] Fetching libdatrie-0.2.13_2.pkg: ... done
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- [summer] [5/68] Fetching jpeg-turbo-3.0.4.pkg: .......... done
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- [summer] [9/68] Fetching cups-2.4.11.pkg: .......... done
- [summer] [10/68] Fetching nettle-3.10_1.pkg: .
- ......... done
- [summer] [11/68] Fetching lcms2-2.16_2.pkg: .......... done
- [summer] [12/68] Fetching libthai-0.1.29_1.pkg: .......... done
- [summer] [13/68] Fetching mkfontscale-1.2.3.pkg: . done
- [summer] [14/68] Fetching cmake-core-3.30.5.pkg: .
- ......
- ... done
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- [summer] [19/68] Fetching libtasn1-4.19.0_1.pkg: .......... done
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- [summer] [21/68] Fetching icu-74.2_1,1.pkg: .....
- ..... done
- [summer] [22/68] Fetching gnutls-3.8.7.1.pkg:
- .......... done
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- [summer] [24/68] Fetching libXScrnSaver-1.2.4_1.pkg: . done
- [summer] [25/68] Fetching libpaper-1.1.28_1.pkg: .. done
- [summer] [26/68] Fetching libX11-1.8.9,1.pkg: .......... done
- [summer] [27/68] Fetching libXrender-0.9.11.pkg: .. done
- [summer] [28/68] Fetching R-4.4.1.pkg:
- ..
- .
- ..
- ..
- ..
- . done
- [summer] [29/68] Fetching xorgproto-2024.1.pkg: .......... done
- [summer] [30/68] Fetching urw-base35-fonts-20200910.pkg: .....
- ..... done
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- ........ done
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- .......
- .. done
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- .......... done
- [summer] [43/68] Fetching pango-1.52.2_1.pkg:
- .......... done
- [summer] [44/68] Fetching brotli-1.1.0,1.pkg: .......... done
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- ....... done
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- [summer] [54/68] Fetching fontconfig-2.15.0_3,1.pkg: .......... done
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- [summer] [58/68] Fetching glib-2.80.5,2.pkg: .........
- . done
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- [summer] [60/68] Fetching gcc13-13.3.0.pkg:
- .
- .
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- .
- ..
- .
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- . done
- [summer] [61/68] Fetching libdaemon-0.14_1.pkg: ... done
- [summer] [62/68] Fetching binutils-2.43.1,1.pkg: ..
- ........ done
- [summer] [63/68] Fetching libXdmcp-1.1.5.pkg: . done
- [summer] [64/68] Fetching tiff-4.6.0.pkg: ......... done
- [summer] [65/68] Fetching tcl86-8.6.15_2.pkg: ......
- .... done
- [summer] [66/68] Fetching rhash-1.4.4_1.pkg: .......... done
- [summer] [67/68] Fetching poppler-data-0.4.12.pkg: .......... done
- [summer] [68/68] Fetching lerc-4.0.0.pkg: .......... done
- Checking integrity...
- done (0 conflicting)
- [summer] [1/68] Installing xorgproto-2024.1...
- [summer] [1/68] Extracting xorgproto-2024.1: .......... done
- [summer] [2/68] Installing libXau-1.0.11...
- [summer] [2/68] Extracting libXau-1.0.11: .......... done
- [summer] [3/68] Installing libXdmcp-1.1.5...
- [summer] [3/68] Extracting libXdmcp-1.1.5: ......... done
- [summer] [4/68] Installing libxcb-1.17.0...
- [summer] [4/68] Extracting libxcb-1.17.0: .......... done
- [summer] [5/68] Installing libICE-1.1.1,1...
- [summer] [5/68] Extracting libICE-1.1.1,1: .......... done
- [summer] [6/68] Installing py311-packaging-24.1...
- [summer] [6/68] Extracting py311-packaging-24.1: .......... done
- [summer] [7/68] Installing libX11-1.8.9,1...
- [summer] [7/68] Extracting libX11-1.8.9,1: .......... done
- [summer] [8/68] Installing libSM-1.2.4,1...
- [summer] [8/68] Extracting libSM-1.2.4,1: .......... done
- [summer] [9/68] Installing png-1.6.44...
- [summer] [9/68] Extracting png-1.6.44: .......... done
- [summer] [10/68] Installing jpeg-turbo-3.0.4...
- [summer] [10/68] Extracting jpeg-turbo-3.0.4: .......... done
- [summer] [11/68] Installing libdeflate-1.22...
- [summer] [11/68] Extracting libdeflate-1.22: .......... done
- [summer] [12/68] Installing libtasn1-4.19.0_1...
- [summer] [12/68] Extracting libtasn1-4.19.0_1: .......... done
- [summer] [13/68] Installing dbus-1.14.10_5,1...
- ===> Creating groups
- Creating group 'messagebus' with gid '556'
- ===> Creating users
- Creating user 'messagebus' with uid '556'
- [summer] [13/68] Extracting dbus-1.14.10_5,1: ......... done
- [summer] [14/68] Installing brotli-1.1.0,1...
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- [summer] [15/68] Installing gmp-6.3.0...
- [summer] [15/68] Extracting gmp-6.3.0: .......... done
- [summer] [16/68] Installing glib-2.80.5,2...
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- [summer] [17/68] Installing jbigkit-2.1_3...
- [summer] [17/68] Extracting jbigkit-2.1_3: .......... done
- [summer] [18/68] Installing lerc-4.0.0...
- [summer] [18/68] Extracting lerc-4.0.0: ........ done
- [summer] [19/68] Installing freetype2-2.13.3...
- [summer] [19/68] Extracting freetype2-2.13.3: .......... done
- [summer] [20/68] Installing nettle-3.10_1...
- [summer] [20/68] Extracting nettle-3.10_1: .......... done
- [summer] [21/68] Installing gnome_subr-1.0...
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- [summer] [22/68] Installing libevent-2.1.12...
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- [summer] [23/68] Installing gdbm-1.24...
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- [summer] [24/68] Installing libfontenc-1.1.8...
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- [summer] [25/68] Installing libXext-1.3.6,1...
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- [summer] [26/68] Installing p11-kit-0.25.5...
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- [summer] [27/68] Installing dbus-glib-0.112_1...
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- [summer] [28/68] Installing libdaemon-0.14_1...
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- [summer] [29/68] Installing tiff-4.6.0...
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- [summer] [30/68] Installing libdatrie-0.2.13_2...
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- [summer] [31/68] Installing libglvnd-1.7.0...
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- [summer] [37/68] Extracting graphite2-1.3.14: .......... done
- [summer] [38/68] Installing avahi-app-0.8_2...
- ===> Creating groups
- Creating group 'avahi' with gid '558'
- ===> Creating users
- Creating user 'avahi' with uid '558'
- [summer] [38/68] Extracting avahi-app-0.8_2: .......... done
- [summer] [39/68] Installing mpfr-4.2.1,1...
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- [summer] [44/68] Installing cups-2.4.11...
- ===> Creating groups
- Creating group 'cups' with gid '193'
- ===> Creating users
- Creating user 'cups' with uid '193'
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- [summer] [62/68] Extracting icu-74.2_1,1: .......... done
- [summer] [63/68] Installing ghostscript10-10.04.0...
- [summer] [63/68] Extracting ghostscript10-10.04.0: .......... done
- [summer] [64/68] Installing tk86-8.6.15...
- [summer] [64/68] Extracting tk86-8.6.15: .......... done
- [summer] [65/68] Installing pango-1.52.2_1...
- [summer] [65/68] Extracting pango-1.52.2_1: .......... done
- [summer] [66/68] Installing libXmu-1.1.4,1...
- [summer] [66/68] Extracting libXmu-1.1.4,1: .......... done
- [summer] [67/68] Installing gcc13-13.3.0...
- [summer] [67/68] Extracting gcc13-13.3.0:
- .........
- . done
- [summer] [68/68] Installing R-4.4.1...
- [summer] [68/68] Extracting R-4.4.1: .......... done
- ==> Running trigger: fontconfig.ucl
- Running fc-cache to build fontconfig cache...
- ==> Running trigger: glib-schemas.ucl
- Compiling glib schemas
- No schema files found: doing nothing.
- ==> Running trigger: gio-modules.ucl
- Generating GIO modules cache
- =====
- Message from freetype2-2.13.3:
-
- --
- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
- the default, emulating a modern version of ClearType. This change inevitably
- leads to different rendering results, and you might change port's options to
- adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
- variable).
-
- The environment variable "FREETYPE_PROPERTIES" can be used to control the
- driver properties. Example:
-
- FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
- cff:no-stem-darkening=1 \
- autofitter:warping=1
-
- This allows to select, say, the subpixel hinting mode at runtime for a given
- application.
-
- If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
- the foundry and information whether they contain wide characters. For example,
- "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
- run time with using pcf:no-long-family-names property, if needed. Example:
-
- FREETYPE_PROPERTIES=pcf:no-long-family-names=1
-
- How to recreate fontconfig cache with using such environment variable,
- if needed:
- # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv
-
- The controllable properties are listed in the section "Controlling FreeType
- Modules" in the reference's table of contents
- (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed).
- =====
- Message from ghostscript10-10.04.0:
-
- --
- This package installs a script named dvipdf that depends on dvips. If you
- want to use this script you need to install print/tex-dvipsk.
- =====
- Message from gcc13-13.3.0:
-
- --
- To ensure binaries built with this toolchain find appropriate versions
- of the necessary run-time libraries, you may want to link using
-
- -Wl,-rpath=/usr/local/lib/gcc13
-
- For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
- transparently.
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved conf-r.1.0.0 (cached)
Processing 2/9: [dune.3.17.0: extract]
Processing 3/9: [dune.3.17.0: extract] [orxgboost.1.2.0: http]
Processing 4/9: [dune.3.17.0: extract] [orxgboost.1.2.0: http] [conf-r: R CMD]
+ /usr/local/bin/R "CMD" "BATCH" "check.r" (CWD=/home/opam/.opam/5.2.0/.opam-switch/build/conf-r.1.0.0)
-> compiled conf-r.1.0.0
Processing 4/9: [dune.3.17.0: extract] [orxgboost.1.2.0: http]
-> installed conf-r.1.0.0
Processing 5/9: [dune.3.17.0: extract] [orxgboost.1.2.0: http]
Processing 5/9: [dune.3.17.0: extract] [orxgboost.1.2.0: extract]
Processing 5/9: [dune.3.17.0: extract] [orxgboost.1.2.0/install_xgboost.r: dl]
-> retrieved dune.3.17.0 (cached)
Processing 5/9: [orxgboost.1.2.0/install_xgboost.r: dl]
Processing 6/9: [orxgboost.1.2.0/install_xgboost.r: dl] [dune: ocaml 15]
-> retrieved orxgboost.1.2.0 (https://github.com/UnixJunkie/orxgboost/archive/v1.2.0.tar.gz)
Processing 6/9: [dune: ocaml 15]
+ /home/opam/.opam/5.2.0/bin/ocaml "boot/bootstrap.ml" "-j" "15" (CWD=/home/opam/.opam/5.2.0/.opam-switch/build/dune.3.17.0)
- ocamlc -output-complete-exe -w -24 -g -o .duneboot.exe -I boot -I +unix unix.cma boot/libs.ml boot/duneboot.ml
- ./.duneboot.exe -j 15
-
Processing 6/9: [dune: ./_boot/dune.exe build]
+ /home/opam/.opam/5.2.0/.opam-switch/build/dune.3.17.0/./_boot/dune.exe "build" "dune.install" "--release" "--profile" "dune-bootstrap" "-j" "15" (CWD=/home/opam/.opam/5.2.0/.opam-switch/build/dune.3.17.0)
-> compiled dune.3.17.0
-> installed dune.3.17.0
Processing 8/9: [orxgboost: R CMD]
+ /usr/local/bin/R "CMD" "BATCH" "install_matrix.r" (CWD=/home/opam/.opam/5.2.0/.opam-switch/build/orxgboost.1.2.0)
+ /usr/local/bin/R "CMD" "BATCH" "install_xgboost.r" (CWD=/home/opam/.opam/5.2.0/.opam-switch/build/orxgboost.1.2.0)
[ERROR] The compilation of orxgboost.1.2.0 failed at "R CMD BATCH install_xgboost.r".
#=== ERROR while compiling orxgboost.1.2.0 ====================================#
# context 2.3.0 | freebsd/x86_64 | ocaml-base-compiler.5.2.0 | file:///home/opam/opam-repository
# path ~/.opam/5.2.0/.opam-switch/build/orxgboost.1.2.0
# command /usr/local/bin/R CMD BATCH install_xgboost.r
# exit-code 1
# env-file ~/.opam/log/orxgboost-35948-f9d708.env
# output-file ~/.opam/log/orxgboost-35948-f9d708.out
<><> Error report <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
+- The following actions failed
| - build orxgboost 1.2.0
+-
+- The following changes have been performed
| - install conf-r 1.0.0
| - install dune 3.17.0
+-
<><> orxgboost.1.2.0 troubleshooting ><><><><><><><><><><><><><><><><><><><><><>
=> Please interact with R to install needed things in user-space:
R
install.packages('Marix', repos='http://cran.r-project.org')
install.packages('xgboost', repos='http://cran.r-project.org')
The former state can be restored with:
/usr/local/bin/opam switch import "/home/opam/.opam/5.2.0/.opam-switch/backup/state-20241217182021.export"
'opam install -vy orxgboost.1.2.0' failed.
jail: /usr/bin/su -l opam -c cd '/' && env OPAM_HEALTH_CHECK_CI='true' CI='true' OPAMCRITERIA='+removed' OPAMEXTERNALSOLVER='builtin-0install' OPAMUTF8='never' OPAMPRECISETRACKING='1' '/usr/bin/env' 'bash' '-c' '
opam remove -y "orxgboost.1.2.0"
opam install -vy "orxgboost.1.2.0"
res=$?
if [ $res = 31 ]; then
if opam show -f x-ci-accept-failures: "orxgboost.1.2.0" | grep -q '\''"freebsd"'\''; then
echo "This package failed and has been disabled for CI using the '\''x-ci-accept-failures'\'' field."
exit 69
fi
fi
exit $res
': failed
"jail" "-c" "name=obuilder_49118_32186" "mount.fstab=/tmp/obuilder-jail-0cc0d1/fstab" "mount.devfs" "path=/obuilder/result/869b0204f6d84d7586224cebd103e34de969f7bd854e359c11db012a3542dfa7/rootfs" "host=inherit" "ip6=inherit" "ip4=inherit" "command=/usr/bin/su" "-l" "opam" "-c" "cd '/' && env OPAM_HEALTH_CHECK_CI='true' CI='true' OPAMCRITERIA='+removed' OPAMEXTERNALSOLVER='builtin-0install' OPAMUTF8='never' OPAMPRECISETRACKING='1' '/usr/bin/env' 'bash' '-c' '
opam remove -y "orxgboost.1.2.0"
opam install -vy "orxgboost.1.2.0"
res=$?
if [ $res = 31 ]; then
if opam show -f x-ci-accept-failures: "orxgboost.1.2.0" | grep -q '\''"freebsd"'\''; then
echo "This package failed and has been disabled for CI using the '\''x-ci-accept-failures'\'' field."
exit 69
fi
fi
exit $res
'" failed with exit status 1
Failed: Build failed
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