Building on summer
(from freebsd)
2024-08-09 00:39.23 ---> using "77d5fe31836124b4684d554707425c4fde23f9ef3df0a804431a47419573778d" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (run (shell "sudo ln -f /usr/local/bin/opam-dev /usr/local/bin/opam"))
2024-08-09 00:39.24 ---> using "a2b22593046b56fadc85e22b0da7b84e903c1f5aa4d42a7c481121ceec28b31f" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q 85058bdc24b7375e71be2d749b47bd7a1c8dd5b4"))
2024-08-09 00:39.25 ---> using "ce11077fd6b5f0fe43748cf38a8fe6352459b19d6d46e6ffe9d0777a816d13c5" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare ~/opam-repository"))
No configuration file found, using built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
~/.profile is already up-to-date.
[NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc.
2024-08-09 00:39.25 ---> using "250005dfc2b47d1b02f9e7f5ee3b74c50d6278cc900e4f133ee5445c0e192fd8" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam switch create --repositories=default '4.14.2' 'ocaml-base-compiler.4.14.2'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "4.14.2"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved ocaml-config.2 (cached)
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> installed host-arch-x86_64.1
-> installed host-system-other.1
-> installed ocaml-options-vanilla.1
-> retrieved ocaml-base-compiler.4.14.2 (cached)
-> installed ocaml-base-compiler.4.14.2
-> installed ocaml-config.2
-> installed ocaml.4.14.2
Done.
# Run eval $(opam env --switch=4.14.2) to update the current shell environment
2024-08-09 00:39.26 ---> using "54c80793d4323fc8fe04470c0b9b3c6685fb05590038ce356a59fe77ca07a083" from cache
/: (run (network host)
(shell "opam update --depexts"))
[WARNING] Unknown update command for bsd, skipping system update
2024-08-09 00:39.26 ---> using "1e6fc31f64ff3948e58dd08c9b8e2efab33b3dde974d579ae503581cc820ed99" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "\
\nopam remove -y \"orrandomForest.3.0.0\"\
\nopam install -vy \"orrandomForest.3.0.0\"\
\nres=$?\
\nif [ $res = 31 ]; then\
\n if opam show -f x-ci-accept-failures: \"orrandomForest.3.0.0\" | grep -q '\"freebsd\"'; then\
\n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
\n exit 69\
\n fi\
\nfi\
\n\
\n\
\nexit $res\
\n"))
[NOTE] orrandomForest.3.0.0 is not installed.
Nothing to do.
The following actions will be performed:
=== install 14 packages
- install batteries 3.8.0 [required by orrandomForest]
- install camlp-streams 5.0.1 [required by batteries]
- install conf-autoconf 0.2 [required by cpu]
- install conf-r 1.0.0 [required by orrandomForest]
- install cpm 12.2.0 [required by orrandomForest]
- install cpu 2.0.0 [required by parany]
- install dolog 6.0.0 [required by orrandomForest]
- install dune 3.16.0 [required by orrandomForest]
- install line_oriented 1.3.0 [required by orrandomForest]
- install minicli 5.0.2 [required by orrandomForest]
- install num 1.5-1 [required by batteries]
- install ocamlfind 1.9.6 [required by batteries]
- install orrandomForest 3.0.0
- install parany 14.0.1 [required by orrandomForest]
The following system packages will first need to be installed:
autoconf math/R
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run pkg to install them (may need root/sudo access)
2. Display the recommended pkg command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/local/bin/sudo "pkg" "install" "-y" "autoconf" "math/R"
- Updating FreeBSD repository catalogue...
- [summer] Fetching data.pkg: .....
- ..... done
- Processing entries:
- ..
- .
- .
- ..
- ..
- .
- . done
- FreeBSD repository update completed. 34465 packages processed.
- All repositories are up to date.
- The following 72 package(s) will be affected (of 0 checked):
-
- New packages to be INSTALLED:
- R: 4.4.1
- autoconf: 2.72
- autoconf-switch: 20220527
- avahi-app: 0.8_2
- binutils: 2.40_6,1
- brotli: 1.1.0,1
- cairo: 1.17.4_2,3
- cmake-core: 3.29.6
- cups: 2.4.10_1
- dbus: 1.14.10_5,1
- dbus-glib: 0.112_1
- fontconfig: 2.15.0_3,1
- freetype2: 2.13.2
- fribidi: 1.0.15
- gcc13: 13.2.0_4
- gdbm: 1.23
- ghostscript10: 10.03.1
- glib: 2.80.4,2
- gmp: 6.3.0
- gnome_subr: 1.0
- gnutls: 3.8.5_3
- graphite2: 1.3.14
- harfbuzz: 9.0.0
- icu: 74.2_1,1
- jbig2dec: 0.20_1
- jbigkit: 2.1_3
- jpeg-turbo: 3.0.3
- jsoncpp: 1.9.5
- lcms2: 2.16_2
- lerc: 4.0.0
- libICE: 1.1.1,1
- libSM: 1.2.3_1,1
- libX11: 1.8.9,1
- libXScrnSaver: 1.2.4_1
- libXau: 1.0.9_1
- libXdmcp: 1.1.5
- libXext: 1.3.6,1
- libXft: 2.3.8
- libXmu: 1.1.4,1
- libXrender: 0.9.10_2
- libXt: 1.3.0,1
- libdaemon: 0.14_1
- libdatrie: 0.2.13_2
- libdeflate: 1.20
- libevent: 2.1.12
- libfontenc: 1.1.8
- libglvnd: 1.7.0
- libidn: 1.42
- libpaper: 1.1.28_1
- libtasn1: 4.19.0_1
- libthai: 0.1.29_1
- libuv: 1.48.0
- libxcb: 1.17.0
- m4: 1.4.19_1,1
- mkfontscale: 1.2.3
- mpc: 1.3.1_1
- mpfr: 4.2.1,1
- nettle: 3.10_1
- openjpeg: 2.5.2_1
- p11-kit: 0.25.3_2
- pango: 1.52.2_1
- pixman: 0.42.2
- png: 1.6.43
- poppler-data: 0.4.12
- py311-packaging: 24.1
- python311: 3.11.9
- rhash: 1.4.4_1
- tcl86: 8.6.14_2
- tiff: 4.6.0
- tk86: 8.6.14_2
- urw-base35-fonts: 20200910
- xorgproto: 2024.1
-
- Number of packages to be installed: 72
-
- The process will require 1 GiB more space.
- 250 MiB to be downloaded.
- [summer] [1/72] Fetching png-1.6.43.pkg: .
- ......... done
- [summer] [2/72] Fetching libxcb-1.17.0.pkg: .......... done
- [summer] [3/72] Fetching libdatrie-0.2.13_2.pkg: ... done
- [summer] [4/72] Fetching freetype2-2.13.2.pkg: .......... done
- [summer] [5/72] Fetching jpeg-turbo-3.0.3.pkg: .......... done
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- [summer] [7/72] Fetching libglvnd-1.7.0.pkg: .....
- ..... done
- [summer] [8/72] Fetching libuv-1.48.0.pkg: .......... done
- [summer] [9/72] Fetching cups-2.4.10_1.pkg: .......... done
- [summer] [10/72] Fetching nettle-3.10_1.pkg: .......... done
- [summer] [11/72] Fetching lcms2-2.16_2.pkg: ...
- ....... done
- [summer] [12/72] Fetching libthai-0.1.29_1.pkg: .......... done
- [summer] [13/72] Fetching mkfontscale-1.2.3.pkg: ... done
- [summer] [14/72] Fetching cmake-core-3.29.6.pkg: .
- ....
- ..... done
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- [summer] [16/72] Fetching fribidi-1.0.15.pkg: .......... done
- [summer] [17/72] Fetching libidn-1.42.pkg: .......... done
- [summer] [18/72] Fetching openjpeg-2.5.2_1.pkg: ....... done
- [summer] [19/72] Fetching libtasn1-4.19.0_1.pkg: .......... done
- [summer] [20/72] Fetching gnome_subr-1.0.pkg: . done
- [summer] [21/72] Fetching icu-74.2_1,1.pkg:
- .....
- ..... done
- [summer] [22/72] Fetching gnutls-3.8.5_3.pkg: .......... done
- [summer] [23/72] Fetching py311-packaging-24.1.pkg: ......... done
- [summer] [24/72] Fetching libXScrnSaver-1.2.4_1.pkg: .. done
- [summer] [25/72] Fetching libpaper-1.1.28_1.pkg: ..... done
- [summer] [26/72] Fetching libX11-1.8.9,1.pkg: .......... done
- [summer] [27/72] Fetching libXrender-0.9.10_2.pkg: .... done
- [summer] [28/72] Fetching R-4.4.1.pkg:
- .
- ..
- ..
- .
- .
- ..
- . done
- [summer] [29/72] Fetching xorgproto-2024.1.pkg: .......... done
- [summer] [30/72] Fetching urw-base35-fonts-20200910.pkg: ...
- ....... done
- [summer] [31/72] Fetching libXft-2.3.8.pkg: ........ done
- [summer] [32/72] Fetching cairo-1.17.4_2,3.pkg: .......... done
- [summer] [33/72] Fetching graphite2-1.3.14.pkg: ......... done
- [summer] [34/72] Fetching harfbuzz-9.0.0.pkg: .......... done
- [summer] [35/72] Fetching libevent-2.1.12.pkg: .......... done
- [summer] [36/72] Fetching python311-3.11.9.pkg:
- ...
- ...
- ...
- . done
- [summer] [37/72] Fetching gdbm-1.23.pkg: .......... done
- [summer] [38/72] Fetching avahi-app-0.8_2.pkg: ....... done
- [summer] [39/72] Fetching ghostscript10-10.03.1.pkg: ..
- ......
- .. done
- [summer] [40/72] Fetching dbus-1.14.10_5,1.pkg: .......... done
- [summer] [41/72] Fetching libfontenc-1.1.8.pkg: ... done
- [summer] [42/72] Fetching jsoncpp-1.9.5.pkg: .......... done
- [summer] [43/72] Fetching tk86-8.6.14_2.pkg: .
- ......... done
- [summer] [44/72] Fetching pango-1.52.2_1.pkg: .......... done
- [summer] [45/72] Fetching brotli-1.1.0,1.pkg: ....... done
- [summer] [46/72] Fetching gmp-6.3.0.pkg: .....
- ..... done
- [summer] [47/72] Fetching mpfr-4.2.1,1.pkg: .......... done
- [summer] [48/72] Fetching libXext-1.3.6,1.pkg: ........ done
- [summer] [49/72] Fetching p11-kit-0.25.3_2.pkg: .......... done
- [summer] [50/72] Fetching dbus-glib-0.112_1.pkg: .......... done
- [summer] [51/72] Fetching jbig2dec-0.20_1.pkg: ........ done
- [summer] [52/72] Fetching libXau-1.0.9_1.pkg: .. done
- [summer] [53/72] Fetching libICE-1.1.1,1.pkg: ........ done
- [summer] [54/72] Fetching libXmu-1.1.4,1.pkg: ......... done
- [summer] [55/72] Fetching fontconfig-2.15.0_3,1.pkg: .......... done
- [summer] [56/72] Fetching pixman-0.42.2.pkg: .......... done
- [summer] [57/72] Fetching m4-1.4.19_1,1.pkg: .......... done
- [summer] [58/72] Fetching mpc-1.3.1_1.pkg: ......... done
- [summer] [59/72] Fetching libSM-1.2.3_1,1.pkg: ... done
- [summer] [60/72] Fetching glib-2.80.4,2.pkg: ...
- ....... done
- [summer] [61/72] Fetching jbigkit-2.1_3.pkg: ...... done
- [summer] [62/72] Fetching gcc13-13.2.0_4.pkg:
- .
- .
- .
- .
- .
- .
- .
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- .. done
- [summer] [63/72] Fetching libdaemon-0.14_1.pkg: ....... done
- [summer] [64/72] Fetching binutils-2.40_6,1.pkg: .....
- ..... done
- [summer] [65/72] Fetching libXdmcp-1.1.5.pkg: .... done
- [summer] [66/72] Fetching tiff-4.6.0.pkg: .......... done
- [summer] [67/72] Fetching tcl86-8.6.14_2.pkg: ..
- ........ done
- [summer] [68/72] Fetching rhash-1.4.4_1.pkg: ....... done
- [summer] [69/72] Fetching autoconf-switch-20220527.pkg: . done
- [summer] [70/72] Fetching poppler-data-0.4.12.pkg: .....
- ..... done
- [summer] [71/72] Fetching lerc-4.0.0.pkg: .......... done
- [summer] [72/72] Fetching autoconf-2.72.pkg: .......... done
- Checking integrity...
- done (0 conflicting)
- [summer] [1/72] Installing xorgproto-2024.1...
- [summer] [1/72] Extracting xorgproto-2024.1: .......... done
- [summer] [2/72] Installing libXau-1.0.9_1...
- [summer] [2/72] Extracting libXau-1.0.9_1: .......... done
- [summer] [3/72] Installing libXdmcp-1.1.5...
- [summer] [3/72] Extracting libXdmcp-1.1.5: ......... done
- [summer] [4/72] Installing libxcb-1.17.0...
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- [summer] [5/72] Installing python311-3.11.9...
- [summer] [5/72] Extracting python311-3.11.9:
- .......... done
- [summer] [6/72] Installing libICE-1.1.1,1...
- [summer] [6/72] Extracting libICE-1.1.1,1: .......... done
- [summer] [7/72] Installing py311-packaging-24.1...
- [summer] [7/72] Extracting py311-packaging-24.1: .......... done
- [summer] [8/72] Installing libX11-1.8.9,1...
- [summer] [8/72] Extracting libX11-1.8.9,1: .......... done
- [summer] [9/72] Installing libSM-1.2.3_1,1...
- [summer] [9/72] Extracting libSM-1.2.3_1,1: .......... done
- [summer] [10/72] Installing png-1.6.43...
- [summer] [10/72] Extracting png-1.6.43: .......... done
- [summer] [11/72] Installing jpeg-turbo-3.0.3...
- [summer] [11/72] Extracting jpeg-turbo-3.0.3: .......... done
- [summer] [12/72] Installing libdeflate-1.20...
- [summer] [12/72] Extracting libdeflate-1.20: .......... done
- [summer] [13/72] Installing libtasn1-4.19.0_1...
- [summer] [13/72] Extracting libtasn1-4.19.0_1: .......... done
- [summer] [14/72] Installing dbus-1.14.10_5,1...
- ===> Creating groups
- Creating group 'messagebus' with gid '556'
- ===> Creating users
- Creating user 'messagebus' with uid '556'
- [summer] [14/72] Extracting dbus-1.14.10_5,1: ......... done
- [summer] [15/72] Installing brotli-1.1.0,1...
- [summer] [15/72] Extracting brotli-1.1.0,1: .......... done
- [summer] [16/72] Installing gmp-6.3.0...
- [summer] [16/72] Extracting gmp-6.3.0: .......... done
- [summer] [17/72] Installing glib-2.80.4,2...
- [summer] [17/72] Extracting glib-2.80.4,2: .......... done
- [summer] [18/72] Installing jbigkit-2.1_3...
- [summer] [18/72] Extracting jbigkit-2.1_3: .......... done
- [summer] [19/72] Installing lerc-4.0.0...
- [summer] [19/72] Extracting lerc-4.0.0: ........ done
- [summer] [20/72] Installing freetype2-2.13.2...
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- [summer] [21/72] Installing nettle-3.10_1...
- [summer] [21/72] Extracting nettle-3.10_1: .......... done
- [summer] [22/72] Installing gnome_subr-1.0...
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- [summer] [23/72] Installing libevent-2.1.12...
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- [summer] [24/72] Installing gdbm-1.23...
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- [summer] [25/72] Installing libfontenc-1.1.8...
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- .. done
- [summer] [28/72] Installing dbus-glib-0.112_1...
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- [summer] [29/72] Installing libdaemon-0.14_1...
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- [summer] [30/72] Installing tiff-4.6.0...
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- [summer] [34/72] Installing mkfontscale-1.2.3...
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- [summer] [36/72] Installing libpaper-1.1.28_1...
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- [summer] [37/72] Installing libXrender-0.9.10_2...
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- [summer] [38/72] Installing graphite2-1.3.14...
- [summer] [38/72] Extracting graphite2-1.3.14: .......... done
- [summer] [39/72] Installing avahi-app-0.8_2...
- ===> Creating groups
- Creating group 'avahi' with gid '558'
- ===> Creating users
- Creating user 'avahi' with uid '558'
- [summer] [39/72] Extracting avahi-app-0.8_2: .......... done
- [summer] [40/72] Installing mpfr-4.2.1,1...
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- [summer] [41/72] Installing fontconfig-2.15.0_3,1...
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- [summer] [42/72] Installing pixman-0.42.2...
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- [summer] [43/72] Installing libXt-1.3.0,1...
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- [summer] [44/72] Installing libuv-1.48.0...
- [summer] [44/72] Extracting libuv-1.48.0: .......... done
- [summer] [45/72] Installing cups-2.4.10_1...
- ===> Creating groups
- Creating group 'cups' with gid '193'
- ===> Creating users
- Creating user 'cups' with uid '193'
- [summer] [45/72] Extracting cups-2.4.10_1: .......... done
- [summer] [46/72] Installing libthai-0.1.29_1...
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- [summer] [47/72] Installing fribidi-1.0.15...
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- [summer] [50/72] Installing libXScrnSaver-1.2.4_1...
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- [summer] [51/72] Installing urw-base35-fonts-20200910...
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- [summer] [52/72] Installing libXft-2.3.8...
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- [summer] [54/72] Installing harfbuzz-9.0.0...
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- ......... done
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- ==> Running trigger: gio-modules.ucl
- Generating GIO modules cache
- ==> Running trigger: glib-schemas.ucl
- Compiling glib schemas
- No schema files found: doing nothing.
- ==> Running trigger: fontconfig.ucl
- Running fc-cache to build fontconfig cache...
- =====
- Message from python311-3.11.9:
-
- --
- Note that some standard Python modules are provided as separate ports
- as they require additional dependencies. They are available as:
-
- py311-gdbm databases/py-gdbm@py311
- py311-sqlite3 databases/py-sqlite3@py311
- py311-tkinter x11-toolkits/py-tkinter@py311
- =====
- Message from freetype2-2.13.2:
-
- --
- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
- the default, emulating a modern version of ClearType. This change inevitably
- leads to different rendering results, and you might change port's options to
- adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
- variable).
-
- The environment variable "FREETYPE_PROPERTIES" can be used to control the
- driver properties. Example:
-
- FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
- cff:no-stem-darkening=1 \
- autofitter:warping=1
-
- This allows to select, say, the subpixel hinting mode at runtime for a given
- application.
-
- If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
- the foundry and information whether they contain wide characters. For example,
- "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
- run time with using pcf:no-long-family-names property, if needed. Example:
-
- FREETYPE_PROPERTIES=pcf:no-long-family-names=1
-
- How to recreate fontconfig cache with using such environment variable,
- if needed:
- # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv
-
- The controllable properties are listed in the section "Controlling FreeType
- Modules" in the reference's table of contents
- (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed).
- =====
- Message from ghostscript10-10.03.1:
-
- --
- This package installs a script named dvipdf that depends on dvips. If you
- want to use this script you need to install print/tex-dvipsk.
- =====
- Message from gcc13-13.2.0_4:
-
- --
- To ensure binaries built with this toolchain find appropriate versions
- of the necessary run-time libraries, you may want to link using
-
- -Wl,-rpath=/usr/local/lib/gcc13
-
- For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
- transparently.
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
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-> retrieved camlp-streams.5.0.1 (cached)
Processing 5/42: [batteries.3.8.0: extract] [conf-r.1.0.0/check.r: dl] [conf-autoconf: autoconf]
Processing 6/42: [batteries.3.8.0: extract] [conf-r.1.0.0/check.r: dl] [cpm.12.2.0: http] [conf-autoconf: autoconf]
-> retrieved conf-r.1.0.0 (https://raw.githubusercontent.com/ocaml/opam-source-archives/main/patches/conf-r/check.r)
Processing 6/42: [batteries.3.8.0: extract] [cpm.12.2.0: http] [conf-autoconf: autoconf]
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Processing 8/42: [batteries.3.8.0: extract] [cpm.12.2.0: http] [cpu.2.0.0: extract] [conf-autoconf: autoconf] [conf-r: R CMD]
-> retrieved batteries.3.8.0 (cached)
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Processing 9/42: [cpm.12.2.0: http] [cpu.2.0.0: extract] [dolog.6.0.0: extract] [conf-autoconf: autoconf] [conf-r: R CMD]
-> retrieved cpu.2.0.0 (cached)
Processing 9/42: [cpm.12.2.0: http] [dolog.6.0.0: extract] [conf-autoconf: autoconf] [conf-r: R CMD]
Processing 10/42: [cpm.12.2.0: http] [dolog.6.0.0: extract] [dune.3.16.0: extract] [conf-autoconf: autoconf] [conf-r: R CMD]
-> retrieved dolog.6.0.0 (cached)
Processing 10/42: [cpm.12.2.0: http] [dune.3.16.0: extract] [conf-autoconf: autoconf] [conf-r: R CMD]
Processing 11/42: [cpm.12.2.0: http] [dune.3.16.0: extract] [line_oriented.1.3.0: extract] [conf-autoconf: autoconf] [conf-r: R CMD]
+ /usr/local/bin/autoconf "-V" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/conf-autoconf.0.2)
- autoconf (GNU Autoconf) 2.72
- Copyright (C) 2023 Free Software Foundation, Inc.
- License GPLv3+/Autoconf: GNU GPL version 3 or later
- <https://gnu.org/licenses/gpl.html>, <https://gnu.org/licenses/exceptions.html>
- This is free software: you are free to change and redistribute it.
- There is NO WARRANTY, to the extent permitted by law.
-
- Written by David J. MacKenzie and Akim Demaille.
-> compiled conf-autoconf.0.2
Processing 11/42: [cpm.12.2.0: http] [dune.3.16.0: extract] [line_oriented.1.3.0: extract] [conf-r: R CMD]
-> installed conf-autoconf.0.2
Processing 12/42: [cpm.12.2.0: http] [dune.3.16.0: extract] [line_oriented.1.3.0: extract] [conf-r: R CMD]
-> retrieved line_oriented.1.3.0 (cached)
Processing 12/42: [cpm.12.2.0: http] [dune.3.16.0: extract] [conf-r: R CMD]
Processing 13/42: [cpm.12.2.0: http] [dune.3.16.0: extract] [minicli.5.0.2: http] [conf-r: R CMD]
+ /usr/local/bin/R "CMD" "BATCH" "check.r" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/conf-r.1.0.0)
-> compiled conf-r.1.0.0
Processing 13/42: [cpm.12.2.0: http] [dune.3.16.0: extract] [minicli.5.0.2: http]
-> installed conf-r.1.0.0
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Processing 14/42: [cpm.12.2.0: extract] [dune.3.16.0: extract] [minicli.5.0.2: http]
-> retrieved cpm.12.2.0 (https://github.com/UnixJunkie/cpmlib/archive/v12.2.0.tar.gz)
Processing 14/42: [dune.3.16.0: extract] [minicli.5.0.2: http]
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-> retrieved num.1.5-1 (cached)
Processing 15/42: [dune.3.16.0: extract] [minicli.5.0.2: http]
Processing 16/42: [dune.3.16.0: extract] [minicli.5.0.2: http] [ocamlfind.1.9.6: extract]
[num: patch] applying num-in-findlib-dir.patch
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Processing 17/42: [dune.3.16.0: extract] [minicli.5.0.2: http] [ocamlfind.1.9.6: extract] [num: gmake opam-legacy]
-> retrieved ocamlfind.1.9.6 (cached)
Processing 17/42: [dune.3.16.0: extract] [minicli.5.0.2: http] [num: gmake opam-legacy]
Processing 18/42: [dune.3.16.0: extract] [minicli.5.0.2: http] [orrandomForest.3.0.0: http] [num: gmake opam-legacy]
[ocamlfind: patch] applying 0001-Harden-test-for-OCaml-5.patch
Processing 19/42: [dune.3.16.0: extract] [minicli.5.0.2: http] [orrandomForest.3.0.0: http] [num: gmake opam-legacy] [ocamlfind: patch]
Processing 19/42: [dune.3.16.0: extract] [minicli.5.0.2: http] [orrandomForest.3.0.0: http] [num: gmake opam-legacy] [ocamlfind: ./configure]
Processing 19/42: [dune.3.16.0: extract] [minicli.5.0.2: extract] [orrandomForest.3.0.0: http] [num: gmake opam-legacy] [ocamlfind: ./configure]
-> retrieved minicli.5.0.2 (https://github.com/UnixJunkie/minicli/archive/v5.0.2.tar.gz)
Processing 19/42: [dune.3.16.0: extract] [orrandomForest.3.0.0: http] [num: gmake opam-legacy] [ocamlfind: ./configure]
Processing 20/42: [dune.3.16.0: extract] [orrandomForest.3.0.0: http] [parany.14.0.1: http] [num: gmake opam-legacy] [ocamlfind: ./configure]
+ /home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6/./configure "-bindir" "/home/opam/.opam/4.14.2/bin" "-sitelib" "/home/opam/.opam/4.14.2/lib" "-mandir" "/home/opam/.opam/4.14.2/man" "-config" "/home/opam/.opam/4.14.2/lib/findlib.conf" "-no-custom" "-no-camlp4" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6)
- Welcome to findlib version 1.9.6
- Configuring core...
- Checking for #remove_directory...
- Testing threading model...
- systhread_supported: true
- Testing DLLs...
- Testing whether ppxopt can be supported...
- Checking for ocamlc -opaque...
- Checking for ocamlopt -g...
- Querying installation: META list not found
- make install will double-check installed META files
- Configuring libraries...
- unix: found
- dynlink: found
- bigarray: found
- compiler-libs: found
- dbm: not present (normal since 4.00)
- graphics: not present (normal since 4.09)
- num: not present (normal since 4.06)
- ocamlbuild: not present (normal since 4.03)
- ocamldoc: found (in +ocamldoc)
- raw_spacetime: not present (normal since 4.12)
- threads: found (in +threads)
- str: found
- labltk: not present (normal since 4.02)
- native dynlink: found
- camlp4: disabled
- bytes: found, installing fake library
- Configuration for stdlib written to site-lib-src/stdlib/META
- Configuration for unix written to site-lib-src/unix/META
- Configuration for dynlink written to site-lib-src/dynlink/META
- Configuration for bigarray written to site-lib-src/bigarray/META
- Configuration for compiler-libs written to site-lib-src/compiler-libs/META
- Configuration for ocamldoc written to site-lib-src/ocamldoc/META
- Configuration for threads written to site-lib-src/threads/META
- Configuration for str written to site-lib-src/str/META
- Configuration for bytes written to site-lib-src/bytes/META
- Detecting compiler arguments: (extractor built) ok
-
- About the OCAML core installation:
- Standard library: /home/opam/.opam/4.14.2/lib/ocaml
- Binaries: /home/opam/.opam/4.14.2/bin
- Manual pages: /home/opam/.opam/4.14.2/man
- Multi-threading type: posix
- The directory of site-specific packages will be
- site-lib: /home/opam/.opam/4.14.2/lib
- The configuration file is written to:
- findlib config file: /home/opam/.opam/4.14.2/lib/findlib.conf
- Software will be installed:
- Libraries: in <site-lib>/findlib
- Binaries: /home/opam/.opam/4.14.2/bin
- Manual pages: /home/opam/.opam/4.14.2/man
- topfind script: /home/opam/.opam/4.14.2/lib/ocaml
- Topfind ppxopt support: yes
- Toolbox: no
- Link custom runtime: no
- Need bytes compatibility: no
-
- Configuration has been written to Makefile.config
-
- You can now do 'make all', and optionally 'make opt', to build ocamlfind.
Processing 20/42: [dune.3.16.0: extract] [orrandomForest.3.0.0: http] [parany.14.0.1: http] [num: gmake opam-legacy] [ocamlfind: gmake all]
Processing 20/42: [dune.3.16.0: extract] [orrandomForest.3.0.0: extract] [parany.14.0.1: http] [num: gmake opam-legacy] [ocamlfind: gmake all]
Processing 20/42: [dune.3.16.0: extract] [orrandomForest.3.0.0/install_matrix.r: dl] [parany.14.0.1: http] [num: gmake opam-legacy] [ocamlfind: gmake all]
Processing 20/42: [dune.3.16.0: extract] [orrandomForest.3.0.0/install_randomForest.r: dl] [parany.14.0.1: http] [num: gmake opam-legacy] [ocamlfind: gmake all]
Processing 20/42: [dune.3.16.0: extract] [orrandomForest.3.0.0/install_randomForest.r: dl] [parany.14.0.1: extract] [num: gmake opam-legacy] [ocamlfind: gmake all]
-> retrieved parany.14.0.1 (https://github.com/UnixJunkie/parany/archive/v14.0.1.tar.gz)
Processing 20/42: [dune.3.16.0: extract] [orrandomForest.3.0.0/install_randomForest.r: dl] [num: gmake opam-legacy] [ocamlfind: gmake all]
-> retrieved orrandomForest.3.0.0 (https://github.com/UnixJunkie/orrandomForest/archive/v3.0.0.tar.gz)
Processing 20/42: [dune.3.16.0: extract] [num: gmake opam-legacy] [ocamlfind: gmake all]
-> retrieved dune.3.16.0 (cached)
Processing 20/42: [num: gmake opam-legacy] [ocamlfind: gmake all]
Processing 21/42: [dune: ocaml 15] [num: gmake opam-legacy] [ocamlfind: gmake all]
+ /usr/local/bin/gmake "all" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6)
- for p in findlib; do ( cd src/$p; /usr/local/bin/gmake all ) || exit; done
- gmake[1]: Entering directory '/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6/src/findlib'
- ocamllex fl_meta.mll
- 22 states, 392 transitions, table size 1700 bytes
- USE_CYGPATH="0"; \
- export USE_CYGPATH; \
- cat findlib_config.mlp | \
- ../../tools/patch '@CONFIGFILE@' '/home/opam/.opam/4.14.2/lib/findlib.conf' | \
- ../../tools/patch '@STDLIB@' '/home/opam/.opam/4.14.2/lib/ocaml' | \
- sed -e 's;@AUTOLINK@;true;g' \
- -e 's;@SYSTEM@;freebsd;g' \
- >findlib_config.ml
- if [ "true" = "true" ]; then \
- cp topfind.ml.in topfind.ml; \
- else \
- sed -e '/PPXOPT_BEGIN/,/PPXOPT_END/ d' topfind.ml.in \
- > topfind.ml ; \
- fi
- ocamldep *.ml *.mli >depend
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c findlib_config.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_split.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_metatoken.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_meta.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -c fl_metascanner.mli
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_metascanner.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -c fl_topo.mli
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_topo.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -c fl_package_base.mli
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_package_base.ml
- File "fl_package_base.ml", line 304, characters 22-40:
- 304 | let pkg_ancestors = query_requirements predlist pkg in
- ^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- File "fl_package_base.ml", line 350, characters 18-36:
- 350 | let ancestors = query_requirements predlist package_name in
- ^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- File "fl_package_base.ml", line 375, characters 23-41:
- 375 | let pkg_ancestors = query_requirements predlist pkg in
- ^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- File "fl_package_base.ml", line 510, characters 16-35:
- 510 | ( let c = package_definitions search_path pkg.package_name in
- ^^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label search_path was omitted in the application of this function.
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -c findlib.mli
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c findlib.ml
- File "findlib.ml", line 390, characters 2-26:
- 390 | Fl_package_base.requires predlist pkg
- ^^^^^^^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- File "findlib.ml", line 396, characters 2-33:
- 396 | Fl_package_base.requires_deeply predlist pkglist
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_args.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_lint.ml
- ocamlc -I +compiler-libs -a -o findlib.cma findlib_config.cmo fl_split.cmo fl_metatoken.cmo fl_meta.cmo fl_metascanner.cmo fl_topo.cmo fl_package_base.cmo findlib.cmo fl_args.cmo fl_lint.cmo
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c ocaml_args.ml
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c frontend.ml
- File "frontend.ml", line 859, characters 10-39:
- 859 | Fl_package_base.package_users predicates1 packages1
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- ocamlc -I +compiler-libs -o ocamlfind -g findlib.cma unix.cma \
- -I +unix -I +dynlink ocaml_args.cmo frontend.cmo
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -c topfind.mli
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c topfind.ml
- File "topfind.ml", line 128, characters 40-63:
- 128 | match Hashtbl.find Toploop.directive_table "ppx" with
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 258, characters 4-27:
- 258 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 268, characters 4-27:
- 268 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 280, characters 4-27:
- 280 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 293, characters 4-27:
- 293 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 307, characters 4-27:
- 307 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 319, characters 4-27:
- 319 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- ocamlc -I +compiler-libs -a -o findlib_top.cma topfind.cmo
- USE_CYGPATH="0"; \
- export USE_CYGPATH; \
- cat topfind_rd1.p | \
- ../../tools/patch '@SITELIB@' '/home/opam/.opam/4.14.2/lib' \
- >topfind
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -c fl_dynload.mli
- ocamlc -I +compiler-libs -opaque -I +unix -I +dynlink -g -c fl_dynload.ml
- ocamlc -I +compiler-libs -a -o findlib_dynload.cma fl_dynload.cmo
- gmake[1]: Leaving directory '/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6/src/findlib'
- /usr/local/bin/gmake all-config
- gmake[1]: Entering directory '/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6'
- USE_CYGPATH="0"; \
- export USE_CYGPATH; \
- cat findlib.conf.in | \
- tools/patch '@SITELIB@' '/home/opam/.opam/4.14.2/lib' | \
- tools/patch '@FINDLIB_PATH@' '/home/opam/.opam/4.14.2/lib' -p >findlib.conf
- if ./tools/cmd_from_same_dir ocamlc; then \
- echo 'ocamlc="ocamlc.opt"' >>findlib.conf; \
- fi
- if ./tools/cmd_from_same_dir ocamlopt; then \
- echo 'ocamlopt="ocamlopt.opt"' >>findlib.conf; \
- fi
- if ./tools/cmd_from_same_dir ocamldep; then \
- echo 'ocamldep="ocamldep.opt"' >>findlib.conf; \
- fi
- if ./tools/cmd_from_same_dir ocamldoc; then \
- echo 'ocamldoc="ocamldoc.opt"' >>findlib.conf; \
- fi
- gmake[1]: Leaving directory '/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6'
Processing 21/42: [dune: ocaml 15] [num: gmake opam-legacy] [ocamlfind: gmake opt]
+ /usr/local/bin/gmake "PROFILE=release" "opam-legacy" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/num.1.5-1)
- /usr/local/bin/gmake -C src all
- gmake[1]: Entering directory '/home/opam/.opam/4.14.2/.opam-switch/build/num.1.5-1/src'
- ocamlc -ccopt -DBNG_ARCH_amd64 -c bng.c
- ocamlc -ccopt -DBNG_ARCH_amd64 -c nat_stubs.c
- ocamlmklib -oc nums bng.o nat_stubs.o
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.ml
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.ml
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.ml
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.ml
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.ml
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.ml
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.ml
- ocamlmklib -o nums -oc nums -linkall int_misc.cmo nat.cmo big_int.cmo arith_flags.cmo ratio.cmo num.cmo arith_status.cmo
- cp ../toplevel/num_top_printers.mli ../toplevel/num_top.mli ../toplevel/num_top_printers.ml ../toplevel/num_top.ml .
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top_printers.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top_printers.ml
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top.mli
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top.ml
- ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -a -o num_top.cma num_top_printers.cmo num_top.cmo
- echo 'version = "1.6~dev"' > META.top
- cat META.num-top.in >> META.top
- ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.ml
- ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.ml
- ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.ml
- ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.ml
- ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.ml
- ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.ml
- ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.ml
- ocamlmklib -o nums -oc nums -linkall int_misc.cmx nat.cmx big_int.cmx arith_flags.cmx ratio.cmx num.cmx arith_status.cmx
- ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -I . -shared -o nums.cmxs nums.cmxa
- gmake[1]: Leaving directory '/home/opam/.opam/4.14.2/.opam-switch/build/num.1.5-1/src'
- cp src/num-legacy.install num.install
-> compiled num.1.5-1
Processing 21/42: [dune: ocaml 15] [ocamlfind: gmake opt]
-> installed num.1.5-1
Processing 22/42: [dune: ocaml 15] [ocamlfind: gmake opt]
+ /usr/local/bin/gmake "opt" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6)
- for p in findlib; do ( cd src/$p; /usr/local/bin/gmake opt ) || exit; done
- gmake[1]: Entering directory '/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6/src/findlib'
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c findlib_config.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_split.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_metatoken.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_meta.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_metascanner.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_topo.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_package_base.ml
- File "fl_package_base.ml", line 304, characters 22-40:
- 304 | let pkg_ancestors = query_requirements predlist pkg in
- ^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- File "fl_package_base.ml", line 350, characters 18-36:
- 350 | let ancestors = query_requirements predlist package_name in
- ^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- File "fl_package_base.ml", line 375, characters 23-41:
- 375 | let pkg_ancestors = query_requirements predlist pkg in
- ^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- File "fl_package_base.ml", line 510, characters 16-35:
- 510 | ( let c = package_definitions search_path pkg.package_name in
- ^^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label search_path was omitted in the application of this function.
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c findlib.ml
- File "findlib.ml", line 390, characters 2-26:
- 390 | Fl_package_base.requires predlist pkg
- ^^^^^^^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- File "findlib.ml", line 396, characters 2-33:
- 396 | Fl_package_base.requires_deeply predlist pkglist
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_args.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_lint.ml
- ocamlopt -I +compiler-libs -g -a -o findlib.cmxa findlib_config.cmx fl_split.cmx fl_metatoken.cmx fl_meta.cmx fl_metascanner.cmx fl_topo.cmx fl_package_base.cmx findlib.cmx fl_args.cmx fl_lint.cmx
- if [ 1 -gt 0 ]; then \
- ocamlopt -I +compiler-libs -g -shared -o findlib.cmxs findlib_config.cmx fl_split.cmx fl_metatoken.cmx fl_meta.cmx fl_metascanner.cmx fl_topo.cmx fl_package_base.cmx findlib.cmx fl_args.cmx fl_lint.cmx; \
- fi
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c ocaml_args.ml
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c frontend.ml
- File "frontend.ml", line 859, characters 10-39:
- 859 | Fl_package_base.package_users predicates1 packages1
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label preds was omitted in the application of this function.
- ocamlopt -I +compiler-libs -g -o ocamlfind_opt findlib.cmxa unix.cmxa \
- -I +unix -I +dynlink ocaml_args.cmx frontend.cmx
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c topfind.ml
- File "topfind.ml", line 128, characters 40-63:
- 128 | match Hashtbl.find Toploop.directive_table "ppx" with
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 258, characters 4-27:
- 258 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 268, characters 4-27:
- 268 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 280, characters 4-27:
- 280 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 293, characters 4-27:
- 293 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 307, characters 4-27:
- 307 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- File "topfind.ml", line 319, characters 4-27:
- 319 | Toploop.directive_table
- ^^^^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: Toploop.directive_table
- ocamlopt -I +compiler-libs -g -a -o findlib_top.cmxa topfind.cmx
- if [ 1 -gt 0 ]; then \
- ocamlopt -I +compiler-libs -g -shared -o findlib_top.cmxs topfind.cmx; \
- fi
- ocamlopt -I +compiler-libs -g -opaque -I +unix -I +dynlink -c fl_dynload.ml
- ocamlopt -I +compiler-libs -g -a -o findlib_dynload.cmxa fl_dynload.cmx
- if [ 1 -gt 0 ]; then \
- ocamlopt -I +compiler-libs -g -shared -o findlib_dynload.cmxs fl_dynload.cmx; \
- fi
- gmake[1]: Leaving directory '/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6/src/findlib'
-> compiled ocamlfind.1.9.6
Processing 22/42: [dune: ocaml 15]
Processing 23/42: [dune: ocaml 15] [ocamlfind: gmake install]
+ /usr/local/bin/gmake "install" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6)
- if [ "1" -eq 1 ]; then \
- for x in camlp4 dbm graphics labltk num ocamlbuild; do \
- if [ -f "/home/opam/.opam/4.14.2/lib/$x/META" ]; then \
- if ! grep -Fq '[distributed with Ocaml]' "//home/opam/.opam/4.14.2/lib/$x/META"; then \
- rm -f site-lib-src/$x/META; \
- fi; \
- fi; \
- done; \
- test -f "site-lib-src/num/META" || rm -f "site-lib-src/num-top/META"; \
- fi
- echo 'SITELIB_META =' > Makefile.packages.in
- for x in `ls site-lib-src`; do test ! -f "site-lib-src/$x/META" || echo $x >> Makefile.packages.in; done
- tr '\n' ' ' < Makefile.packages.in > Makefile.packages
- rm Makefile.packages.in
- install -d "/home/opam/.opam/4.14.2/bin"
- install -d "/home/opam/.opam/4.14.2/man"
- /usr/local/bin/gmake install-config
- gmake[1]: Entering directory '/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6'
- install -d "`dirname \"/home/opam/.opam/4.14.2/lib/findlib.conf\"`"
- test -f "/home/opam/.opam/4.14.2/lib/findlib.conf" || install -c findlib.conf "/home/opam/.opam/4.14.2/lib/findlib.conf"
- gmake[1]: Leaving directory '/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6'
- for p in findlib; do ( cd src/$p; /usr/local/bin/gmake install ); done
- gmake[1]: Entering directory '/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6/src/findlib'
- install -d "/home/opam/.opam/4.14.2/lib/findlib"
- install -d "/home/opam/.opam/4.14.2/bin"
- test 1 -eq 0 || install -d "/home/opam/.opam/4.14.2/lib/ocaml"
- test 1 -eq 0 || install -c topfind "/home/opam/.opam/4.14.2/lib/ocaml/"
- files=` ../../tools/collect_files ../../Makefile.config \
- findlib.cmi findlib.mli findlib.cma findlib.cmxa findlib.a findlib.cmxs \
- findlib_config.cmi findlib_config.ml topfind.cmi topfind.mli \
- fl_args.cmi fl_lint.cmi fl_meta.cmi fl_split.cmi fl_topo.cmi ocaml_args.cmi \
- fl_package_base.mli fl_package_base.cmi fl_metascanner.mli fl_metascanner.cmi \
- fl_metatoken.cmi findlib_top.cma findlib_top.cmxa findlib_top.a findlib_top.cmxs \
- findlib_dynload.cma findlib_dynload.cmxa findlib_dynload.a findlib_dynload.cmxs fl_dynload.mli fl_dynload.cmi \
- META` && \
- install -c $files "/home/opam/.opam/4.14.2/lib/findlib/"
- f="ocamlfind"; { test -f ocamlfind_opt && f="ocamlfind_opt"; }; \
- install -c $f "/home/opam/.opam/4.14.2/bin/ocamlfind"
- # the following "if" block is only needed for 4.00beta2
- if [ 1 -eq 0 -a -f "/home/opam/.opam/4.14.2/lib/ocaml/compiler-libs/topdirs.cmi" ]; then \
- cd "/home/opam/.opam/4.14.2/lib/ocaml/compiler-libs/"; \
- install -c topdirs.cmi toploop.cmi "/home/opam/.opam/4.14.2/lib/findlib/"; \
- fi
- gmake[1]: Leaving directory '/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6/src/findlib'
- /usr/local/bin/gmake install-meta
- gmake[1]: Entering directory '/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6'
- for x in bigarray bytes compiler-libs dynlink ocamldoc stdlib str threads unix ; do install -d "/home/opam/.opam/4.14.2/lib/$x"; install -c site-lib-src/$x/META "/home/opam/.opam/4.14.2/lib/$x/META.tmp" && mv "/home/opam/.opam/4.14.2/lib/$x/META.tmp" "/home/opam/.opam/4.14.2/lib/$x/META"; done
- install -d "/home/opam/.opam/4.14.2/lib/findlib"; install -c Makefile.packages "/home/opam/.opam/4.14.2/lib/findlib/Makefile.packages"
- gmake[1]: Leaving directory '/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6'
- test ! -f 'site-lib-src/num-top/META' || { cd src/findlib; /usr/local/bin/gmake install-num-top; }
- test ! -f 'site-lib-src/camlp4/META' || install -c tools/safe_camlp4 "/home/opam/.opam/4.14.2/bin"
- /usr/local/bin/gmake install-doc
- gmake[1]: Entering directory '/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6'
- install -d "/home/opam/.opam/4.14.2/man/man1" "/home/opam/.opam/4.14.2/man/man3" "/home/opam/.opam/4.14.2/man/man5"
- install -c doc/ref-man/ocamlfind.1 "/home/opam/.opam/4.14.2/man/man1"
- install -c doc/ref-man/META.5 doc/ref-man/site-lib.5 doc/ref-man/findlib.conf.5 "/home/opam/.opam/4.14.2/man/man5"
- gmake[1]: Leaving directory '/home/opam/.opam/4.14.2/.opam-switch/build/ocamlfind.1.9.6'
-> installed ocamlfind.1.9.6
Processing 23/42: [dune: ocaml 15]
+ /home/opam/.opam/4.14.2/bin/ocaml "boot/bootstrap.ml" "-j" "15" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/dune.3.16.0)
- ocamlc -output-complete-exe -w -24 -g -o .duneboot.exe -I boot unix.cma boot/libs.ml boot/duneboot.ml
- ./.duneboot.exe -j 15
-
Processing 23/42: [dune: ./_boot/dune.exe build]
+ /home/opam/.opam/4.14.2/.opam-switch/build/dune.3.16.0/./_boot/dune.exe "build" "dune.install" "--release" "--profile" "dune-bootstrap" "-j" "15" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/dune.3.16.0)
-> compiled dune.3.16.0
-> installed dune.3.16.0
Processing 25/42: [camlp-streams: dune build]
Processing 26/42: [camlp-streams: dune build] [cpu: autoconf]
Processing 27/42: [camlp-streams: dune build] [cpu: autoconf] [dolog: dune build]
Processing 28/42: [camlp-streams: dune build] [cpu: autoconf] [dolog: dune build] [minicli: dune build]
+ /home/opam/.opam/4.14.2/bin/dune "build" "-p" "dolog" "-j" "15" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/dolog.6.0.0)
-> compiled dolog.6.0.0
Processing 28/42: [camlp-streams: dune build] [cpu: autoconf] [minicli: dune build]
-> installed dolog.6.0.0
Processing 29/42: [camlp-streams: dune build] [cpu: autoconf] [minicli: dune build]
+ /home/opam/.opam/4.14.2/bin/dune "build" "-p" "minicli" "-j" "15" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/minicli.5.0.2)
-> compiled minicli.5.0.2
Processing 29/42: [camlp-streams: dune build] [cpu: autoconf]
-> installed minicli.5.0.2
Processing 30/42: [camlp-streams: dune build] [cpu: autoconf]
+ /home/opam/.opam/4.14.2/bin/dune "build" "-p" "camlp-streams" "-j" "15" "@install" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/camlp-streams.5.0.1)
-> compiled camlp-streams.5.0.1
Processing 30/42: [cpu: autoconf]
-> installed camlp-streams.5.0.1
Processing 31/42: [cpu: autoconf]
Processing 32/42: [batteries: dune build] [cpu: autoconf]
+ /usr/local/bin/autoconf (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/cpu.2.0.0)
- configure.ac:8: warning: The macro 'AC_HEADER_STDC' is obsolete.
- configure.ac:8: You should run autoupdate.
- ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from...
- configure.ac:8: the top level
Processing 32/42: [batteries: dune build] [cpu: autoheader]
+ /usr/local/bin/autoheader (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/cpu.2.0.0)
Processing 32/42: [batteries: dune build] [cpu: ./configure]
+ /home/opam/.opam/4.14.2/.opam-switch/build/cpu.2.0.0/./configure (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/cpu.2.0.0)
- checking for ocamlc... ocamlc
- OCaml version is 4.14.2
- OCaml library path is /home/opam/.opam/4.14.2/lib/ocaml
- checking for ocamlopt... ocamlopt
- checking for ocamlc.opt... ocamlc.opt
- checking for ocamlopt.opt... ocamlopt.opt
- checking for dynlink.cmxa... yes
- checking for ocaml... ocaml
- checking for ocamldep... ocamldep
- checking for ocamlmktop... ocamlmktop
- checking for ocamlmklib... ocamlmklib
- checking for ocamldoc... ocamldoc
- checking for ocamlbuild... no
- checking for gcc... no
- checking for cc... cc
- checking whether the C compiler works... yes
- checking for C compiler default output file name... a.out
- checking for suffix of executables...
- checking whether we are cross compiling... no
- checking for suffix of object files... o
- checking whether the compiler supports GNU C... yes
- checking whether cc accepts -g... yes
- checking for cc option to enable C11 features... none needed
- checking for stdio.h... yes
- checking for stdlib.h... yes
- checking for string.h... yes
- checking for inttypes.h... yes
- checking for stdint.h... yes
- checking for strings.h... yes
- checking for sys/stat.h... yes
- checking for sys/types.h... yes
- checking for unistd.h... yes
- checking for grep that handles long lines and -e... /usr/bin/grep
- checking for egrep... /usr/bin/grep -E
- checking for sched.h... yes
- checking for cc options needed to detect all undeclared functions... -fno-builtin
- checking whether sched_setaffinity is declared... yes
- checking for mach/thread_policy.h... no
- checking whether thread_policy_set is declared... no
- configure: creating ./config.status
- config.status: creating src/config.h
Processing 32/42: [batteries: dune build] [cpu: dune build]
+ /home/opam/.opam/4.14.2/bin/dune "build" "-p" "cpu" "-j" "15" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/cpu.2.0.0)
-> compiled cpu.2.0.0
Processing 32/42: [batteries: dune build]
-> installed cpu.2.0.0
Processing 33/42: [batteries: dune build]
Processing 34/42: [batteries: dune build] [parany: dune build]
+ /home/opam/.opam/4.14.2/bin/dune "build" "-p" "parany" "-j" "15" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/parany.14.0.1)
-> compiled parany.14.0.1
Processing 34/42: [batteries: dune build]
-> installed parany.14.0.1
Processing 35/42: [batteries: dune build]
+ /home/opam/.opam/4.14.2/bin/dune "build" "-p" "batteries" "-j" "15" "@install" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/batteries.3.8.0)
-> compiled batteries.3.8.0
-> installed batteries.3.8.0
Processing 37/42: [cpm: dune build]
Processing 38/42: [cpm: dune build] [line_oriented: dune build]
+ /home/opam/.opam/4.14.2/bin/dune "build" "-p" "line_oriented" "-j" "15" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/line_oriented.1.3.0)
-> compiled line_oriented.1.3.0
Processing 38/42: [cpm: dune build]
-> installed line_oriented.1.3.0
Processing 39/42: [cpm: dune build]
+ /home/opam/.opam/4.14.2/bin/dune "build" "-p" "cpm" "-j" "15" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/cpm.12.2.0)
-> compiled cpm.12.2.0
-> installed cpm.12.2.0
Processing 41/42: [orrandomForest: dune build]
+ /home/opam/.opam/4.14.2/bin/dune "build" "-p" "orrandomForest" "-j" "15" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/orrandomForest.3.0.0)
-> compiled orrandomForest.3.0.0
Processing 42/42: [orrandomForest: R CMD]
+ /usr/local/bin/R "CMD" "BATCH" "install_randomForest.r" (CWD=/home/opam/.opam/4.14.2/.opam-switch/build/orrandomForest.3.0.0)
[ERROR] The installation of orrandomForest failed at "R CMD BATCH install_randomForest.r".
#=== ERROR while installing orrandomForest.3.0.0 ==============================#
# context 2.2.0 | freebsd/x86_64 | ocaml-base-compiler.4.14.2 | file:///home/opam/opam-repository
# path ~/.opam/4.14.2/.opam-switch/build/orrandomForest.3.0.0
# command /usr/local/bin/R CMD BATCH install_randomForest.r
# exit-code 1
# env-file ~/.opam/log/orrandomForest-5726-da76d3.env
# output-file ~/.opam/log/orrandomForest-5726-da76d3.out
<><> Error report <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
+- The following actions failed
| - install orrandomForest 3.0.0
+-
+- The following changes have been performed
| - install batteries 3.8.0
| - install camlp-streams 5.0.1
| - install conf-autoconf 0.2
| - install conf-r 1.0.0
| - install cpm 12.2.0
| - install cpu 2.0.0
| - install dolog 6.0.0
| - install dune 3.16.0
| - install line_oriented 1.3.0
| - install minicli 5.0.2
| - install num 1.5-1
| - install ocamlfind 1.9.6
| - install parany 14.0.1
+-
<><> orrandomForest.3.0.0 troubleshooting <><><><><><><><><><><><><><><><><><><>
=> Please interact with R to install needed things in user-space:
R
install.packages('Marix', repos='http://cran.r-project.org')
install.packages('randomForest', repos='http://cran.r-project.org')
The former state can be restored with:
/usr/local/bin/opam switch import "/home/opam/.opam/4.14.2/.opam-switch/backup/state-20240809003939.export"
'opam install -vy orrandomForest.3.0.0' failed.
jail: /usr/bin/su -l opam -c cd '/' && env OPAMCRITERIA='+removed' OPAMEXTERNALSOLVER='builtin-0install' OPAMUTF8='never' OPAMPRECISETRACKING='1' '/usr/bin/env' 'bash' '-c' '
opam remove -y "orrandomForest.3.0.0"
opam install -vy "orrandomForest.3.0.0"
res=$?
if [ $res = 31 ]; then
if opam show -f x-ci-accept-failures: "orrandomForest.3.0.0" | grep -q '\''"freebsd"'\''; then
echo "This package failed and has been disabled for CI using the '\''x-ci-accept-failures'\'' field."
exit 69
fi
fi
exit $res
': failed
"jail" "-c" "name=obuilder_78231_33032" "mount.fstab=/tmp/obuilder-jail-8d66e2/fstab" "mount.devfs" "path=/obuilder/result/b087b231ab9e5f967df245b0efaf1a6419c1ccfb11779ffd49399c3c0267bce8/rootfs" "host=inherit" "ip6=inherit" "ip4=inherit" "command=/usr/bin/su" "-l" "opam" "-c" "cd '/' && env OPAMCRITERIA='+removed' OPAMEXTERNALSOLVER='builtin-0install' OPAMUTF8='never' OPAMPRECISETRACKING='1' '/usr/bin/env' 'bash' '-c' '
opam remove -y "orrandomForest.3.0.0"
opam install -vy "orrandomForest.3.0.0"
res=$?
if [ $res = 31 ]; then
if opam show -f x-ci-accept-failures: "orrandomForest.3.0.0" | grep -q '\''"freebsd"'\''; then
echo "This package failed and has been disabled for CI using the '\''x-ci-accept-failures'\'' field."
exit 69
fi
fi
exit $res
'" failed with exit status 1
Failed: Build failed
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