Building on summer (from freebsd) 2024-07-02 20:41.02 ---> using "77d5fe31836124b4684d554707425c4fde23f9ef3df0a804431a47419573778d" from cache /: (user (uid 1000) (gid 1000)) /: (env OPAMPRECISETRACKING 1) /: (env OPAMUTF8 never) /: (env OPAMEXTERNALSOLVER builtin-0install) /: (env OPAMCRITERIA +removed) /: (run (shell "sudo ln -f /usr/local/bin/opam-dev /usr/local/bin/opam")) 2024-07-02 20:41.02 ---> using "a2b22593046b56fadc85e22b0da7b84e903c1f5aa4d42a7c481121ceec28b31f" from cache /: (run (network host) (shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q 175a8ca8b27d9a46ed86ec5d7b1130c98a153055")) 2024-07-02 20:41.02 ---> using "12d681098b105578a67465aa7bc396c5d90e9ce4e3304a8d75f23641353fa26c" from cache /: (run (shell "rm -rf ~/.opam && opam init -ya --bare ~/opam-repository")) No configuration file found, using built-in defaults. Checking for available remotes: rsync and local, git. - you won't be able to use mercurial repositories unless you install the hg command on your system. - you won't be able to use darcs repositories unless you install the darcs command on your system. <><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><> [default] Initialised User configuration: ~/.profile is already up-to-date. [NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc. 2024-07-02 20:41.03 ---> using "cd58f29b8c142c1ae36c06cbe6d040fc45053855e85f74d3d710bce30c463662" from cache /: (run (cache (opam-archives (target /home/opam/.opam/download-cache))) (network host) (shell "opam switch create --repositories=default '4.14.1' 'ocaml-base-compiler.4.14.1'")) <><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><> Switch invariant: ["ocaml-base-compiler" {= "4.14.1"}] <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved ocaml-config.2 (cached) -> installed base-bigarray.base -> installed base-threads.base -> installed base-unix.base -> installed host-arch-x86_64.1 -> installed host-system-other.1 -> installed ocaml-options-vanilla.1 -> retrieved ocaml-base-compiler.4.14.1 (cached) -> installed ocaml-base-compiler.4.14.1 -> installed ocaml-config.2 -> installed ocaml.4.14.1 Done. # Run eval $(opam env --switch=4.14.1) to update the current shell environment 2024-07-02 20:41.03 ---> using "7b308b2584dc258233cfb37ad83354a0804ec90976555e191659bff7e597c170" from cache /: (run (network host) (shell "opam update --depexts")) [WARNING] Unknown update command for bsd, skipping system update 2024-07-02 20:41.03 ---> using "3f0c14f5761a225622a6acf1a058a90ab52281bdd9172d3eca06be38cd0468ad" from cache /: (run (cache (opam-archives (target /home/opam/.opam/download-cache))) (network host) (shell "\ \nopam remove -y \"conf-rdkit.1\"\ \nopam install -vy \"conf-rdkit.1\"\ \nres=$?\ \nif [ $res = 31 ]; then\ \n if opam show -f x-ci-accept-failures: \"conf-rdkit.1\" | grep -q '\"freebsd\"'; then\ \n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\ \n exit 69\ \n fi\ \nfi\ \n\ \n\ \nexit $res\ \n")) [NOTE] conf-rdkit.1 is not installed. Nothing to do. The following actions will be performed: === install 1 package - install conf-rdkit 1 The following system packages will first need to be installed: rdkit <><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><> opam believes some required external dependencies are missing. opam can: > 1. Run pkg to install them (may need root/sudo access) 2. Display the recommended pkg command and wait while you run it manually (e.g. in another terminal) 3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable 4. Abort the installation [1/2/3/4] 1 + /usr/local/bin/sudo "pkg" "install" "-y" "rdkit" - Updating FreeBSD repository catalogue... - [summer] Fetching data.pkg: .... - ...... done - Processing entries: - ... - .. - .. - . - .. done - FreeBSD repository update completed. 34081 packages processed. - All repositories are up to date. - The following 83 package(s) will be affected (of 0 checked): - - New packages to be INSTALLED: - adobe-cmaps: 20051217_4 - binutils: 2.40_5,1 - boost-libs: 1.84.0 - brotli: 1.1.0,1 - coordgenlibs: 3.0.2 - fontconfig: 2.15.0_2,1 - freetype2: 2.13.2 - fribidi: 1.0.13_1 - gcc13: 13.2.0_4 - giflib: 5.2.1_1 - glib: 2.80.3,2 - gmp: 6.3.0 - graphite2: 1.3.14 - harfbuzz: 8.4.0 - icu: 74.2_1,1 - jbigkit: 2.1_2 - jpeg-turbo: 3.0.2 - lcms2: 2.16_1 - libX11: 1.8.7_1,1 - libXScrnSaver: 1.2.4_1 - libXau: 1.0.9_1 - libXdmcp: 1.1.5 - libXext: 1.3.6,1 - libXft: 2.3.7_1 - libXrender: 0.9.10_2 - libdeflate: 1.20 - libfontenc: 1.1.8 - libgcrypt: 1.10.3_1 - libgpg-error: 1.48 - libimagequant: 4.3.1 - libraqm: 0.10.1 - libxcb: 1.16.1 - libxml2: 2.11.7 - libxslt: 1.1.37_1 - maeparser: 1.3.1_3 - mkfontscale: 1.2.3 - mpc: 1.3.1_1 - mpfr: 4.2.1,1 - openblas: 0.3.25,2 - openjpeg: 2.5.2 - png: 1.6.43 - py39-appdirs: 1.4.4 - py39-boost-libs: 1.84.0 - py39-brotli: 1.1.0 - py39-certifi: 2024.2.2 - py39-contourpy: 1.2.0 - py39-cycler: 0.12.1 - py39-dateutil: 2.9.0 - py39-fonttools: 4.51.0 - py39-fs2: 2.4.16 - py39-importlib-resources: 6.4.0 - py39-kiwisolver: 1.4.5,1 - py39-lxml: 4.9.3 - py39-matplotlib: 3.8.0 - py39-numpy: 1.25.0_6,1 - py39-olefile: 0.46 - py39-packaging: 23.2 - py39-pillow: 10.3.0 - py39-pluggy: 1.4.0 - py39-pyparsing: 3.1.2 - py39-pytz: 2024.1,1 - py39-reportlab: 4.1.0 - py39-setuptools: 63.1.0_1 - py39-six: 1.16.0 - py39-tkinter: 3.9.18_7 - py39-tornado: 6.3.3 - py39-unicodedata2: 15.1.0 - py39-zipp: 3.18.1 - py39-zopfli: 0.2.3 - qhull: 8.0.2_3,1 - rdkit: 2023.09.6 - suitesparse-amd: 3.3.1 - suitesparse-camd: 3.3.1 - suitesparse-ccolamd: 3.3.2 - suitesparse-cholmod: 5.2.0 - suitesparse-colamd: 3.3.2 - suitesparse-config: 7.6.1 - suitesparse-umfpack: 6.3.2 - tcl86: 8.6.14_2 - tiff: 4.4.0_3 - tk86: 8.6.14_2 - webp: 1.3.2_1 - xorgproto: 2023.2 - - Number of packages to be installed: 83 - - The process will require 1 GiB more space. - 230 MiB to be downloaded. - [summer] [1/83] Fetching png-1.6.43.pkg: .......... done - [summer] [2/83] Fetching qhull-8.0.2_3,1.pkg: .......... done - [summer] [3/83] Fetching libxcb-1.16.1.pkg: - .......... done - [summer] [4/83] Fetching libraqm-0.10.1.pkg: ..... done - [summer] [5/83] Fetching freetype2-2.13.2.pkg: .......... done - [summer] [6/83] Fetching jpeg-turbo-3.0.2.pkg: ......... done - [summer] [7/83] Fetching py39-kiwisolver-1.4.5,1.pkg: ....... done - [summer] [8/83] Fetching suitesparse-camd-3.3.1.pkg: .......... done - [summer] [9/83] Fetching py39-matplotlib-3.8.0.pkg: .. - ....... - . done - [summer] [10/83] Fetching libxslt-1.1.37_1.pkg: ........ done - [summer] [11/83] Fetching boost-libs-1.84.0.pkg: - ... - .... - ... done - [summer] [12/83] Fetching py39-zipp-3.18.1.pkg: .. done - [summer] [13/83] Fetching py39-lxml-4.9.3.pkg: .......... done - [summer] [14/83] Fetching lcms2-2.16_1.pkg: ........ - .. done - [summer] [15/83] Fetching suitesparse-cholmod-5.2.0.pkg: .......... done - [summer] [16/83] Fetching py39-olefile-0.46.pkg: ... done - [summer] [17/83] Fetching mkfontscale-1.2.3.pkg: ... done - [summer] [18/83] Fetching py39-numpy-1.25.0_6,1.pkg: . - ... - .... - .. done - [summer] [19/83] Fetching libdeflate-1.20.pkg: ......... done - [summer] [20/83] Fetching fribidi-1.0.13_1.pkg: ......... done - [summer] [21/83] Fetching openjpeg-2.5.2.pkg: ......... done - [summer] [22/83] Fetching maeparser-1.3.1_3.pkg: ......... done - [summer] [23/83] Fetching py39-pillow-10.3.0.pkg: .......... done - [summer] [24/83] Fetching py39-fs2-2.4.16.pkg: .......... done - [summer] [25/83] Fetching rdkit-2023.09.6.pkg: - .. - . - .. - ... - .. done - [summer] [26/83] Fetching py39-pluggy-1.4.0.pkg: ..... done - [summer] [27/83] Fetching libxml2-2.11.7.pkg: .......... done - [summer] [28/83] Fetching py39-cycler-0.12.1.pkg: .. done - [summer] [29/83] Fetching icu-74.2_1,1.pkg: - ... - .. - .... - . done - [summer] [30/83] Fetching libXScrnSaver-1.2.4_1.pkg: ..... done - [summer] [31/83] Fetching libimagequant-4.3.1.pkg: .. - ........ done - [summer] [32/83] Fetching libX11-1.8.7_1,1.pkg: .......... done - [summer] [33/83] Fetching giflib-5.2.1_1.pkg: - ........ done - [summer] [34/83] Fetching libXrender-0.9.10_2.pkg: ..... done - [summer] [35/83] Fetching suitesparse-umfpack-6.3.2.pkg: .......... done - [summer] [36/83] Fetching xorgproto-2023.2.pkg: ........ done - [summer] [37/83] Fetching suitesparse-ccolamd-3.3.2.pkg: - .... done - [summer] [38/83] Fetching py39-brotli-1.1.0.pkg: ... done - [summer] [39/83] Fetching libXft-2.3.7_1.pkg: ....... done - [summer] [40/83] Fetching webp-1.3.2_1.pkg: .......... done - [summer] [41/83] Fetching py39-reportlab-4.1.0.pkg: .... - ...... done - [summer] [42/83] Fetching py39-pyparsing-3.1.2.pkg: ....... done - [summer] [43/83] Fetching graphite2-1.3.14.pkg: .......... done - [summer] [44/83] Fetching coordgenlibs-3.0.2.pkg: .......... done - [summer] [45/83] Fetching harfbuzz-8.4.0.pkg: . - ......... done - [summer] [46/83] Fetching suitesparse-amd-3.3.1.pkg: ........ done - [summer] [47/83] Fetching py39-fonttools-4.51.0.pkg: ... - ....... done - [summer] [48/83] Fetching adobe-cmaps-20051217_4.pkg: ... - ....... done - [summer] [49/83] Fetching libfontenc-1.1.8.pkg: .. done - [summer] [50/83] Fetching py39-tornado-6.3.3.pkg: ........ - .. done - [summer] [51/83] Fetching py39-contourpy-1.2.0.pkg: .......... done - [summer] [52/83] Fetching py39-unicodedata2-15.1.0.pkg: .......... done - [summer] [53/83] Fetching libgcrypt-1.10.3_1.pkg: .......... done - [summer] [54/83] Fetching tk86-8.6.14_2.pkg: .. - ........ done - [summer] [55/83] Fetching brotli-1.1.0,1.pkg: ......... done - [summer] [56/83] Fetching py39-packaging-23.2.pkg: ......... done - [summer] [57/83] Fetching libgpg-error-1.48.pkg: - .......... done - [summer] [58/83] Fetching gmp-6.3.0.pkg: .......... done - [summer] [59/83] Fetching py39-dateutil-2.9.0.pkg: .......... done - [summer] [60/83] Fetching mpfr-4.2.1,1.pkg: .......... done - [summer] [61/83] Fetching suitesparse-config-7.6.1.pkg: .... done - [summer] [62/83] Fetching libXext-1.3.6,1.pkg: .......... done - [summer] [63/83] Fetching suitesparse-colamd-3.3.2.pkg: ..... done - [summer] [64/83] Fetching py39-six-1.16.0.pkg: ..... done - [summer] [65/83] Fetching py39-tkinter-3.9.18_7.pkg: ... done - [summer] [66/83] Fetching py39-setuptools-63.1.0_1.pkg: .......... done - [summer] [67/83] Fetching py39-pytz-2024.1,1.pkg: ....... done - [summer] [68/83] Fetching libXau-1.0.9_1.pkg: .. done - [summer] [69/83] Fetching py39-appdirs-1.4.4.pkg: .. done - [summer] [70/83] Fetching py39-boost-libs-1.84.0.pkg: .......... done - [summer] [71/83] Fetching fontconfig-2.15.0_2,1.pkg: .......... done - [summer] [72/83] Fetching py39-zopfli-0.2.3.pkg: .......... done - [summer] [73/83] Fetching mpc-1.3.1_1.pkg: ......... done - [summer] [74/83] Fetching py39-certifi-2024.2.2.pkg: .......... done - [summer] [75/83] Fetching glib-2.80.3,2.pkg: - ....... - ... done - [summer] [76/83] Fetching jbigkit-2.1_2.pkg: ......... done - [summer] [77/83] Fetching gcc13-13.2.0_4.pkg: - . - .. - . - . - .. - . - . - . done - [summer] [78/83] Fetching py39-importlib-resources-6.4.0.pkg: .......... done - [summer] [79/83] Fetching binutils-2.40_5,1.pkg: - ........ - .. done - [summer] [80/83] Fetching libXdmcp-1.1.5.pkg: .... done - [summer] [81/83] Fetching tiff-4.4.0_3.pkg: .......... done - [summer] [82/83] Fetching tcl86-8.6.14_2.pkg: - .......... done - [summer] [83/83] Fetching openblas-0.3.25,2.pkg: . - ...... - ... done - Checking integrity... - done (0 conflicting) - [summer] [1/83] Installing gmp-6.3.0... - [summer] [1/83] Extracting gmp-6.3.0: .......... done - [summer] [2/83] Installing mpfr-4.2.1,1... - [summer] [2/83] Extracting mpfr-4.2.1,1: .......... done - [summer] [3/83] Installing xorgproto-2023.2... - [summer] [3/83] Extracting xorgproto-2023.2: .......... done - [summer] [4/83] Installing mpc-1.3.1_1... - [summer] [4/83] Extracting mpc-1.3.1_1: ......... done - [summer] [5/83] Installing binutils-2.40_5,1... - [summer] [5/83] Extracting binutils-2.40_5,1: - .......... done - [summer] [6/83] Installing libXau-1.0.9_1... - [summer] [6/83] Extracting libXau-1.0.9_1: .......... done - [summer] [7/83] Installing gcc13-13.2.0_4... - [summer] [7/83] Extracting gcc13-13.2.0_4: ......... - . done - [summer] [8/83] Installing libXdmcp-1.1.5... - [summer] [8/83] Extracting libXdmcp-1.1.5: ......... done - [summer] [9/83] Installing png-1.6.43... - [summer] [9/83] Extracting png-1.6.43: .......... done - [summer] [10/83] Installing libxcb-1.16.1... - [summer] [10/83] Extracting libxcb-1.16.1: .......... done - [summer] [11/83] Installing brotli-1.1.0,1... - [summer] [11/83] Extracting brotli-1.1.0,1: .......... done - [summer] [12/83] Installing openblas-0.3.25,2... - [summer] [12/83] Extracting openblas-0.3.25,2: .......... done - [summer] [13/83] Installing freetype2-2.13.2... - [summer] [13/83] Extracting freetype2-2.13.2: .......... done - [summer] [14/83] Installing libX11-1.8.7_1,1... - [summer] [14/83] Extracting libX11-1.8.7_1,1: .......... done - [summer] [15/83] Installing suitesparse-config-7.6.1... - [summer] [15/83] Extracting suitesparse-config-7.6.1: .......... done - [summer] [16/83] Installing jpeg-turbo-3.0.2... - [summer] [16/83] Extracting jpeg-turbo-3.0.2: .......... done - [summer] [17/83] Installing suitesparse-camd-3.3.1... - [summer] [17/83] Extracting suitesparse-camd-3.3.1: .......... done - [summer] [18/83] Installing libdeflate-1.20... - [summer] [18/83] Extracting libdeflate-1.20: .......... done - [summer] [19/83] Installing libXrender-0.9.10_2... - [summer] [19/83] Extracting libXrender-0.9.10_2: .......... done - [summer] [20/83] Installing suitesparse-ccolamd-3.3.2... - [summer] [20/83] Extracting suitesparse-ccolamd-3.3.2: .......... done - [summer] [21/83] Installing suitesparse-amd-3.3.1... - [summer] [21/83] Extracting suitesparse-amd-3.3.1: .......... done - [summer] [22/83] Installing py39-packaging-23.2... - [summer] [22/83] Extracting py39-packaging-23.2: .......... done - [summer] [23/83] Installing libgpg-error-1.48... - [summer] [23/83] Extracting libgpg-error-1.48: .......... done - [summer] [24/83] Installing libXext-1.3.6,1... - [summer] [24/83] Extracting libXext-1.3.6,1: .......... done - [summer] [25/83] Installing suitesparse-colamd-3.3.2... - [summer] [25/83] Extracting suitesparse-colamd-3.3.2: .......... done - [summer] [26/83] Installing fontconfig-2.15.0_2,1... - [summer] [26/83] Extracting fontconfig-2.15.0_2,1: .......... done - [summer] [27/83] Installing jbigkit-2.1_2... - [summer] [27/83] Extracting jbigkit-2.1_2: .......... done - [summer] [28/83] Installing suitesparse-cholmod-5.2.0... - [summer] [28/83] Extracting suitesparse-cholmod-5.2.0: .......... done - [summer] [29/83] Installing libxml2-2.11.7... - [summer] [29/83] Extracting libxml2-2.11.7: .......... done - [summer] [30/83] Installing libXScrnSaver-1.2.4_1... - [summer] [30/83] Extracting libXScrnSaver-1.2.4_1: .......... done - [summer] [31/83] Installing libXft-2.3.7_1... - [summer] [31/83] Extracting libXft-2.3.7_1: .......... done - [summer] [32/83] Installing graphite2-1.3.14... - [summer] [32/83] Extracting graphite2-1.3.14: .......... done - [summer] [33/83] Installing libgcrypt-1.10.3_1... - [summer] [33/83] Extracting libgcrypt-1.10.3_1: .......... done - [summer] [34/83] Installing py39-setuptools-63.1.0_1... - [summer] [34/83] Extracting py39-setuptools-63.1.0_1: .......... done - [summer] [35/83] Installing glib-2.80.3,2... - [summer] [35/83] Extracting glib-2.80.3,2: .......... done - [summer] [36/83] Installing tiff-4.4.0_3... - [summer] [36/83] Extracting tiff-4.4.0_3: .......... done - [summer] [37/83] Installing tcl86-8.6.14_2... - [summer] [37/83] Extracting tcl86-8.6.14_2: .......... done - [summer] [38/83] Installing libxslt-1.1.37_1... - [summer] [38/83] Extracting libxslt-1.1.37_1: .......... done - [summer] [39/83] Installing lcms2-2.16_1... - 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[summer] [83/83] Extracting rdkit-2023.09.6: .. - ........ done - ==> Running trigger: gio-modules.ucl - Generating GIO modules cache - ==> Running trigger: glib-schemas.ucl - Compiling glib schemas - No schema files found: doing nothing. - ==> Running trigger: fontconfig.ucl - Running fc-cache to build fontconfig cache... - ===== - Message from gcc13-13.2.0_4: - - -- - To ensure binaries built with this toolchain find appropriate versions - of the necessary run-time libraries, you may want to link using - - -Wl,-rpath=/usr/local/lib/gcc13 - - For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens - transparently. - ===== - Message from freetype2-2.13.2: - - -- - The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as - the default, emulating a modern version of ClearType. This change inevitably - leads to different rendering results, and you might change port's options to - adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment - variable). - - The environment variable "FREETYPE_PROPERTIES" can be used to control the - driver properties. Example: - - FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ - cff:no-stem-darkening=1 \ - autofitter:warping=1 - - This allows to select, say, the subpixel hinting mode at runtime for a given - application. - - If LONG_PCF_NAMES port's option was enabled, the PCF family names may include - the foundry and information whether they contain wide characters. For example, - "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at - run time with using pcf:no-long-family-names property, if needed. Example: - - FREETYPE_PROPERTIES=pcf:no-long-family-names=1 - - How to recreate fontconfig cache with using such environment variable, - if needed: - # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv - - The controllable properties are listed in the section "Controlling FreeType - Modules" in the reference's table of contents - (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). - ===== - Message from boost-libs-1.84.0: - - -- - You have built the Boost library with thread support. - - Don't forget to add -pthread to your linker options when - linking your code. - ===== - Message from py39-boost-libs-1.84.0: - - -- - You have built the Boost library with thread support. - - Don't forget to add -pthread to your linker options when - linking your code. <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> Processing 1/3: [conf-rdkit.1/test.cpp: dl] -> retrieved conf-rdkit.1 (https://raw.githubusercontent.com/ocaml/opam-source-archives/main/patches/conf-rdkit/test.cpp) Processing 2/3: [conf-rdkit: sh] + /bin/sh "-c" "c++ test.cpp -o test -I/usr/local/include -I/usr/local/include/rdkit -L/usr/local/lib -lRDKitRDGeneral -DSWIG" (CWD=/home/opam/.opam/4.14.1/.opam-switch/build/conf-rdkit.1) Processing 2/3: [conf-rdkit: ./test] + /home/opam/.opam/4.14.1/.opam-switch/build/conf-rdkit.1/./test (CWD=/home/opam/.opam/4.14.1/.opam-switch/build/conf-rdkit.1) - 2023.09.6 -> compiled conf-rdkit.1 -> installed conf-rdkit.1 Done. 2024-07-02 20:43.45 ---> saved as "6ad73a9de09c29c9780bdfcc2298b831822857d8e8828753115a46560181dd14" Job succeeded