Building on spring
(from freebsd)
2024-04-18 03:23.29 ---> using "77d5fe31836124b4684d554707425c4fde23f9ef3df0a804431a47419573778d" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (run (shell "sudo ln -f /usr/local/bin/opam-dev /usr/local/bin/opam"))
2024-04-18 03:23.30 ---> using "a2b22593046b56fadc85e22b0da7b84e903c1f5aa4d42a7c481121ceec28b31f" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q f089d8564db935c703bea70a4b3d8335ffa1bef3"))
2024-04-18 03:23.30 ---> using "83de7f37a3fdfdf2af7d52001c195007ba3d03fbf63bb1c5deeb0bd7199a7e68" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare ~/opam-repository"))
No configuration file found, using built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
~/.profile is already up-to-date.
[NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc.
2024-04-18 03:23.30 ---> using "ae05d419fac6605f1fa37d4b0e1385766018ebaa3233982c89fd3cd33bf5b52b" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam switch create --repositories=default '4.14.1' 'ocaml-base-compiler.4.14.1'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "4.14.1"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> installed ocaml-options-vanilla.1
-> retrieved ocaml-base-compiler.4.14.1 (https://github.com/ocaml/ocaml/archive/4.14.1.tar.gz)
-> installed ocaml-base-compiler.4.14.1
-> installed ocaml-config.2
-> installed ocaml.4.14.1
Done.
# Run eval $(opam env --switch=4.14.1) to update the current shell environment
2024-04-18 03:23.30 ---> using "141be27e9e0ebb1fb3c3878d245ca5b32294a540950418ca62d711f486fac687" from cache
/: (run (network host)
(shell "opam update --depexts"))
[WARNING] Unknown update command for bsd, skipping system update
2024-04-18 03:23.30 ---> using "72aa242bda62d28199dcb867f3fc8b109a5eb0c910cde2077a6e022a52d02938" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "\
\nopam remove -y \"conf-rdkit.1\"\
\nopam install -vy \"conf-rdkit.1\"\
\nres=$?\
\nif [ $res = 31 ]; then\
\n if opam show -f x-ci-accept-failures: \"conf-rdkit.1\" | grep -q '\"freebsd\"'; then\
\n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
\n exit 69\
\n fi\
\nfi\
\n\
\n\
\nexit $res\
\n"))
[NOTE] conf-rdkit.1 is not installed.
Nothing to do.
The following actions will be performed:
=== install 1 package
- install conf-rdkit 1
The following system packages will first need to be installed:
rdkit
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run pkg to install them (may need root/sudo access)
2. Display the recommended pkg command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/local/bin/sudo "pkg" "install" "-y" "rdkit"
- Updating FreeBSD repository catalogue...
- [spring] Fetching meta.conf: . done
- [spring] Fetching packagesite.pkg: ...
- .
- ...
- ... done
- Processing entries: .
- ..
- .
- ..
- ..
- .
- . done
- FreeBSD repository update completed. 34060 packages processed.
- All repositories are up to date.
- New version of pkg detected; it needs to be installed first.
- The following 1 package(s) will be affected (of 0 checked):
-
- Installed packages to be UPGRADED:
- pkg: 1.20.9 -> 1.21.2
-
- Number of packages to be upgraded: 1
-
- The process will require 7 MiB more space.
- 12 MiB to be downloaded.
- [spring] [1/1] Fetching pkg-1.21.2.pkg: .
- .
- .
- .
- ...
- ... done
- Checking integrity... done (0 conflicting)
- [spring] [1/1] Upgrading pkg from 1.20.9 to 1.21.2...
- [spring] [1/1] Extracting pkg-1.21.2: .......... done
- Updating FreeBSD repository catalogue...
- [spring] Fetching meta.conf: . done
- [spring] Fetching data.pkg:
- .....
- ..... done
- Processing entries:
- ..
- ..
- ..
- ..
- .. done
- FreeBSD repository update completed. 34060 packages processed.
- All repositories are up to date.
- The following 83 package(s) will be affected (of 0 checked):
-
- New packages to be INSTALLED:
- adobe-cmaps: 20051217_4
- binutils: 2.40_5,1
- boost-libs: 1.84.0
- brotli: 1.1.0,1
- coordgenlibs: 3.0.2
- fontconfig: 2.15.0_2,1
- freetype2: 2.13.2
- fribidi: 1.0.13_1
- gcc13: 13.2.0_4
- giflib: 5.2.1_1
- glib: 2.80.0,2
- gmp: 6.3.0
- graphite2: 1.3.14
- harfbuzz: 8.4.0
- icu: 74.2_1,1
- jbigkit: 2.1_2
- jpeg-turbo: 3.0.2
- lcms2: 2.16_1
- libX11: 1.8.7_1,1
- libXScrnSaver: 1.2.4_1
- libXau: 1.0.9_1
- libXdmcp: 1.1.5
- libXext: 1.3.6,1
- libXft: 2.3.7_1
- libXrender: 0.9.10_2
- libdeflate: 1.20
- libfontenc: 1.1.8
- libgcrypt: 1.10.3_1
- libgpg-error: 1.48
- libimagequant: 4.3.0_2
- libraqm: 0.10.1
- libxcb: 1.16.1
- libxml2: 2.11.7
- libxslt: 1.1.37_1
- maeparser: 1.3.1_3
- mkfontscale: 1.2.3
- mpc: 1.3.1_1
- mpfr: 4.2.1,1
- openblas: 0.3.25,2
- openjpeg: 2.5.2
- png: 1.6.43
- py39-appdirs: 1.4.4
- py39-boost-libs: 1.84.0
- py39-brotli: 1.1.0
- py39-certifi: 2024.2.2
- py39-contourpy: 1.2.0
- py39-cycler: 0.12.1
- py39-dateutil: 2.9.0
- py39-fonttools: 4.51.0
- py39-fs2: 2.4.16
- py39-importlib-resources: 6.4.0
- py39-kiwisolver: 1.4.5,1
- py39-lxml: 4.9.3
- py39-matplotlib: 3.8.0
- py39-numpy: 1.25.0_6,1
- py39-olefile: 0.46
- py39-packaging: 23.2
- py39-pillow: 10.3.0
- py39-pluggy: 1.4.0
- py39-pyparsing: 3.1.2
- py39-pytz: 2024.1,1
- py39-reportlab: 4.1.0
- py39-setuptools: 63.1.0_1
- py39-six: 1.16.0
- py39-tkinter: 3.9.18_7
- py39-tornado: 6.3.3
- py39-unicodedata2: 15.1.0
- py39-zipp: 3.18.1
- py39-zopfli: 0.2.3
- qhull: 8.0.2_3,1
- rdkit: 2023.09.6
- suitesparse-amd: 3.3.1
- suitesparse-camd: 3.3.1
- suitesparse-ccolamd: 3.3.2
- suitesparse-cholmod: 5.2.0
- suitesparse-colamd: 3.3.2
- suitesparse-config: 7.6.1
- suitesparse-umfpack: 6.3.2
- tcl86: 8.6.14_2
- tiff: 4.4.0_3
- tk86: 8.6.14_2
- webp: 1.3.2_1
- xorgproto: 2023.2
-
- Number of packages to be installed: 83
-
- The process will require 1 GiB more space.
- 228 MiB to be downloaded.
- [spring] [1/83] Fetching png-1.6.43.pkg: ........ done
- [spring] [2/83] Fetching qhull-8.0.2_3,1.pkg:
- .......... done
- [spring] [3/83] Fetching libxcb-1.16.1.pkg: .......... done
- [spring] [4/83] Fetching libraqm-0.10.1.pkg: .... done
- [spring] [5/83] Fetching freetype2-2.13.2.pkg: .......... done
- [spring] [6/83] Fetching jpeg-turbo-3.0.2.pkg: .......... done
- [spring] [7/83] Fetching py39-kiwisolver-1.4.5,1.pkg: ........ done
- [spring] [8/83] Fetching suitesparse-camd-3.3.1.pkg: ...
- ....... done
- [spring] [9/83] Fetching py39-matplotlib-3.8.0.pkg: ...
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- [spring] [10/83] Fetching libxslt-1.1.37_1.pkg: ....
- ..... done
- [spring] [11/83] Fetching boost-libs-1.84.0.pkg: .
- .....
- .... done
- [spring] [12/83] Fetching py39-zipp-3.18.1.pkg: ... done
- [spring] [13/83] Fetching py39-lxml-4.9.3.pkg: .......... done
- [spring] [14/83] Fetching lcms2-2.16_1.pkg: .........
- . done
- [spring] [15/83] Fetching suitesparse-cholmod-5.2.0.pkg: .......... done
- [spring] [16/83] Fetching py39-olefile-0.46.pkg: ..... done
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- ........ done
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- [spring] [70/83] Fetching py39-boost-libs-1.84.0.pkg: .......... done
- [spring] [71/83] Fetching fontconfig-2.15.0_2,1.pkg: .......... done
- [spring] [72/83] Fetching py39-zopfli-0.2.3.pkg: .......... done
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- [spring] [74/83] Fetching py39-certifi-2024.2.2.pkg: .......... done
- [spring] [75/83] Fetching glib-2.80.0,2.pkg: .
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- [spring] [77/83] Fetching gcc13-13.2.0_4.pkg:
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- [spring] [78/83] Fetching py39-importlib-resources-6.4.0.pkg: .......... done
- [spring] [79/83] Fetching binutils-2.40_5,1.pkg: ...
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- [spring] [80/83] Fetching libXdmcp-1.1.5.pkg: ..... done
- [spring] [81/83] Fetching tiff-4.4.0_3.pkg: .......... done
- [spring] [82/83] Fetching tcl86-8.6.14_2.pkg: .....
- ..... done
- [spring] [83/83] Fetching openblas-0.3.25,2.pkg: ..
- .......
- . done
- Checking integrity...
- done (0 conflicting)
- [spring] [1/83] Installing gmp-6.3.0...
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- [spring] [2/83] Installing mpfr-4.2.1,1...
- [spring] [2/83] Extracting mpfr-4.2.1,1: .......... done
- [spring] [3/83] Installing xorgproto-2023.2...
- [spring] [3/83] Extracting xorgproto-2023.2: .....
- ..... done
- [spring] [4/83] Installing mpc-1.3.1_1...
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- [spring] [5/83] Installing binutils-2.40_5,1...
- [spring] [5/83] Extracting binutils-2.40_5,1: .
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- .... done
- [spring] [6/83] Installing libXau-1.0.9_1...
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- [spring] [7/83] Installing gcc13-13.2.0_4...
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- . done
- [spring] [8/83] Installing libXdmcp-1.1.5...
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- [spring] [9/83] Installing png-1.6.43...
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- [spring] [10/83] Installing libxcb-1.16.1...
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- [spring] [15/83] Installing suitesparse-config-7.6.1...
- [spring] [15/83] Extracting suitesparse-config-7.6.1: .......... done
- [spring] [16/83] Installing jpeg-turbo-3.0.2...
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- [spring] [27/83] Installing jbigkit-2.1_2...
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- [spring] [28/83] Installing suitesparse-cholmod-5.2.0...
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- [spring] [29/83] Installing libxml2-2.11.7...
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- [spring] [32/83] Installing graphite2-1.3.14...
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- [spring] [39/83] Installing lcms2-2.16_1...
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- .......
- ... done
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- .. done
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- [spring] [78/83] Installing py39-importlib-resources-6.4.0...
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- ==> Running trigger: glib-schemas.ucl
- Compiling glib schemas
- No schema files found: doing nothing.
- ==> Running trigger: gio-modules.ucl
- Generating GIO modules cache
- ==> Running trigger: fontconfig.ucl
- Running fc-cache to build fontconfig cache...
- =====
- Message from gcc13-13.2.0_4:
-
- --
- To ensure binaries built with this toolchain find appropriate versions
- of the necessary run-time libraries, you may want to link using
-
- -Wl,-rpath=/usr/local/lib/gcc13
-
- For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
- transparently.
- =====
- Message from freetype2-2.13.2:
-
- --
- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
- the default, emulating a modern version of ClearType. This change inevitably
- leads to different rendering results, and you might change port's options to
- adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
- variable).
-
- The environment variable "FREETYPE_PROPERTIES" can be used to control the
- driver properties. Example:
-
- FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
- cff:no-stem-darkening=1 \
- autofitter:warping=1
-
- This allows to select, say, the subpixel hinting mode at runtime for a given
- application.
-
- If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
- the foundry and information whether they contain wide characters. For example,
- "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
- run time with using pcf:no-long-family-names property, if needed. Example:
-
- FREETYPE_PROPERTIES=pcf:no-long-family-names=1
-
- How to recreate fontconfig cache with using such environment variable,
- if needed:
- # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv
-
- The controllable properties are listed in the section "Controlling FreeType
- Modules" in the reference's table of contents
- (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed).
- =====
- Message from boost-libs-1.84.0:
-
- --
- You have built the Boost library with thread support.
-
- Don't forget to add -pthread to your linker options when
- linking your code.
- =====
- Message from py39-boost-libs-1.84.0:
-
- --
- You have built the Boost library with thread support.
-
- Don't forget to add -pthread to your linker options when
- linking your code.
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 2/3: [conf-rdkit: sh]
+ /bin/sh "-c" "c++ test.cpp -o test -I/usr/local/include -I/usr/local/include/rdkit -L/usr/local/lib -lRDKitRDGeneral -DSWIG" (CWD=/home/opam/.opam/4.14.1/.opam-switch/build/conf-rdkit.1)
Processing 2/3: [conf-rdkit: ./test]
+ /home/opam/.opam/4.14.1/.opam-switch/build/conf-rdkit.1/./test (CWD=/home/opam/.opam/4.14.1/.opam-switch/build/conf-rdkit.1)
- 2023.09.6
-> compiled conf-rdkit.1
-> installed conf-rdkit.1
Done.
2024-04-18 03:26.31 ---> saved as "d3fcbfc1d7f742b0b700e528c5749c246106a30862891f045b06dd51cabb6614"
Job succeeded
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