Building on spring
(from freebsd)
2024-01-04 07:12.42 ---> using "77d5fe31836124b4684d554707425c4fde23f9ef3df0a804431a47419573778d" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (run (shell "sudo ln -f /usr/local/bin/opam-dev /usr/local/bin/opam"))
2024-01-04 07:12.42 ---> using "a2b22593046b56fadc85e22b0da7b84e903c1f5aa4d42a7c481121ceec28b31f" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q cbef5a5f6021e22273d68a59b37ba23ef2063222"))
2024-01-04 07:12.42 ---> using "e6b78b65089c9b28c2de1cc4809ae729962036297fc37f0b35587c86027f75b0" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare ~/opam-repository"))
No configuration file found, using built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
/usr/home/opam/.profile is already up-to-date.
[NOTE] Make sure that /usr/home/opam/.profile is well sourced in your ~/.bashrc.
2024-01-04 07:12.42 ---> using "b34910d281ccdd026c7bbd24419ac0ae4316badb21d722d336b620ef5e4cac56" from cache
/: (run (cache (opam-archives (target /usr/home/opam/.opam/download-cache)))
(network host)
(shell "opam switch create --repositories=default '5.1.0' 'ocaml-base-compiler.5.1.0'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "5.1.0"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> installed ocaml-options-vanilla.1
-> retrieved ocaml-base-compiler.5.1.0 (cached)
-> installed ocaml-base-compiler.5.1.0
-> installed ocaml-config.3
-> installed ocaml.5.1.0
-> installed base-domains.base
-> installed base-nnp.base
Done.
# Run eval $(opam env --switch=5.1.0) to update the current shell environment
2024-01-04 07:12.43 ---> using "cc0b216169a1c101d58ff1b4f60022a6450e66d2ca7665a939785596843879e5" from cache
/: (run (network host)
(shell "opam update --depexts"))
[WARNING] Unknown update command for bsd, skipping system update
2024-01-04 07:12.43 ---> using "5d6b36df0dd6949cf6fe7cf2d1e688122a86892388c00b4df27948cb96f5ab7b" from cache
/: (env OCAMLPARAM warn-error=+8,_)
/: (run (cache (opam-archives (target /usr/home/opam/.opam/download-cache)))
(network host)
(shell "\
\nopam remove -y \"lbvs_consent.2.2.0\"\
\nopam install -vy \"lbvs_consent.2.2.0\"\
\nres=$?\
\nif [ $res = 31 ]; then\
\n if opam show -f x-ci-accept-failures: \"lbvs_consent.2.2.0\" | grep -q '\"freebsd\"'; then\
\n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
\n exit 69\
\n fi\
\nfi\
\n\
\n\
\nexit $res\
\n"))
[NOTE] lbvs_consent.2.2.0 is not installed.
Nothing to do.
The following actions will be performed:
=== install 37 packages
- install base-bytes base [required by dokeysto]
- install batteries 3.7.2 [required by lbvs_consent]
- install bitv 1.6 [required by lbvs_consent]
- install camlp-streams 5.0.1 [required by batteries]
- install camlzip 1.11 [required by lbvs_consent]
- install conf-autoconf 0.1 [required by cpu]
- install conf-boost 1 [required by lbvs_consent]
- install conf-openbabel 0.1 [required by lbvs_consent]
- install conf-pkg-config 3 [required by conf-openbabel]
- install conf-python-3 9.0.0 [required by lbvs_consent]
- install conf-rdkit 1 [required by lbvs_consent]
- install conf-which 1 [required by conf-autoconf]
- install conf-zlib 1 [required by camlzip]
- install cpm 12.2.0 [required by lbvs_consent]
- install cpu 2.0.0 [required by parany]
- install csexp 1.5.2 [required by dune-configurator]
- install dokeysto 4.0.1 [required by lbvs_consent]
- install dolog 6.0.0 [required by lbvs_consent]
- install dune 3.12.1 [required by lbvs_consent]
- install dune-configurator 3.12.1 [required by extunix]
- install extunix 0.4.1 [required by dokeysto]
- install lbvs_consent 2.2.0
- install minicli 5.0.2 [required by lbvs_consent]
- install num 1.5 [required by batteries]
- install ocaml-compiler-libs v0.12.4 [required by ppxlib]
- install ocamlfind 1.9.6 [required by batteries, camlzip]
- install ounit2 2.2.7 [required by qcheck-ounit]
- install parany 14.0.1 [required by lbvs_consent]
- install ppx_derivers 1.2.1 [required by ppxlib]
- install ppxlib 0.31.0 [required by extunix]
- install qcheck 0.21.3 [required by lbvs_consent]
- install qcheck-core 0.21.3 [required by qcheck]
- install qcheck-ounit 0.21.3 [required by qcheck]
- install seq base [required by ounit2]
- install sexplib0 v0.16.0 [required by ppxlib]
- install stdlib-shims 0.3.0 [required by ppxlib, ounit2]
- install vpt 5.0.0 [required by lbvs_consent]
The following system packages will first need to be installed:
autoconf boost-all openbabel python3 rdkit
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run pkg to install them (may need root/sudo access)
2. Display the recommended pkg command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/local/bin/sudo "pkg" "install" "-y" "autoconf" "boost-all" "openbabel" "python3" "rdkit"
- Updating FreeBSD repository catalogue...
- [spring] Fetching packagesite.pkg: .....
- ..... done
- Processing entries:
- ..
- .
- ..
- ..
- .
- .
- . done
- FreeBSD repository update completed. 33986 packages processed.
- All repositories are up to date.
- The following 182 package(s) will be affected (of 0 checked):
-
- New packages to be INSTALLED:
- adobe-cmaps: 20051217_4
- adwaita-icon-theme: 42.0
- at-spi2-core: 2.50.0
- autoconf: 2.71
- autoconf-switch: 20220527
- avahi-app: 0.8_1
- binutils: 2.40_4,1
- boost-all: 1.83.0
- boost-docs: 1.83.0
- boost-jam: 1.83.0
- boost-libs: 1.83.0
- brotli: 1.1.0,1
- cairo: 1.17.4_2,3
- colord: 1.4.6
- coordgenlibs: 3.0.2
- cups: 2.4.6
- dbus: 1.14.10_1,1
- dbus-glib: 0.112
- dejavu: 2.37_3
- duktape-lib: 2.7.0
- enchant2: 2.2.15_3
- encodings: 1.0.5,1
- font-bh-ttf: 1.0.3_5
- font-misc-ethiopic: 1.0.4
- font-misc-meltho: 1.0.3_5
- fontconfig: 2.14.2,1
- freetype2: 2.13.1
- fribidi: 1.0.13
- gcc12: 12.2.0_6
- gdbm: 1.23
- gdk-pixbuf2: 2.42.10_1
- geoclue: 2.5.7
- giflib: 5.2.1
- glib: 2.78.3,2
- glib-networking: 2.78.0
- gmp: 6.3.0
- gnome_subr: 1.0
- gnutls: 3.7.9
- gobject-introspection: 1.78.1,1
- graphene: 1.10.8
- graphite2: 1.3.14
- gsettings-desktop-schemas: 42.0
- gstreamer1: 1.22.5
- gstreamer1-plugins: 1.22.5
- gstreamer1-plugins-bad: 1.22.5
- gstreamer1-plugins-gl: 1.22.5
- gtk-update-icon-cache: 3.24.31
- gtk3: 3.24.34_1
- harfbuzz: 8.2.2
- harfbuzz-icu: 8.2.2
- hicolor-icon-theme: 0.17
- hunspell: 1.7.2
- hwdata: 0.374,1
- hyphen: 2.8.8
- icu: 73.2,1
- iso-codes: 4.15.0
- jbigkit: 2.1_1
- jpeg-turbo: 3.0.0
- json-glib: 1.8.0
- lcms2: 2.15_2
- libGLU: 9.0.2_2
- libICE: 1.1.0_2,1
- libSM: 1.2.3_1,1
- libX11: 1.8.7,1
- libXScrnSaver: 1.2.4
- libXau: 1.0.9
- libXcomposite: 0.4.6,1
- libXcursor: 1.2.0_1
- libXdamage: 1.1.6
- libXdmcp: 1.1.3
- libXext: 1.3.4,1
- libXfixes: 6.0.0
- libXft: 2.3.7
- libXi: 1.8,1
- libXinerama: 1.1.4_2,1
- libXrandr: 1.5.2
- libXrender: 0.9.10_2
- libXt: 1.2.1,1
- libXtst: 1.2.3_2
- libXxf86vm: 1.1.4_3
- libdaemon: 0.14_1
- libdatrie: 0.2.13_1
- libdeflate: 1.19
- libedit: 3.1.20221030,1
- libepoll-shim: 0.0.20230411
- libepoxy: 1.5.9
- libevent: 2.1.12
- libfontenc: 1.1.7
- libgcrypt: 1.10.2
- libglvnd: 1.6.0_2
- libgpg-error: 1.47
- libgudev: 237
- libgusb: 0.3.10_1
- libimagequant: 4.2.1
- libmspack: 0.11alpha
- libnice: 0.1.21_1
- libnotify: 0.8.2
- libpaper: 1.1.28
- libproxy: 0.4.18
- libraqm: 0.10.1
- librsvg2-rust: 2.56.4
- libsecret: 0.20.5_2
- libsoup: 2.74.3
- libtasn1: 4.19.0
- libthai: 0.1.29
- libudev-devd: 0.5.2
- libunwind: 20211201_2
- libwpe: 1.12.0
- libxcb: 1.15_1
- libxkbcommon: 1.5.0
- libxml2: 2.10.4_1
- libxslt: 1.1.37
- m4: 1.4.19,1
- maeparser: 1.3.1_2
- mkfontscale: 1.2.1
- mpc: 1.3.1_1
- mpfr: 4.2.1,1
- nettle: 3.9.1
- openbabel: 3.1.1.178
- openblas: 0.3.20,2
- openjpeg: 2.5.0_1
- orc: 0.4.34_1
- p11-kit: 0.24.1_2
- pango: 1.50.14
- pixman: 0.42.2
- png: 1.6.40
- polkit: 123_1
- py39-appdirs: 1.4.4
- py39-boost-libs: 1.83.0
- py39-brotli: 1.1.0
- py39-cairo: 1.21.0,1
- py39-certifi: 2023.7.22
- py39-contourpy: 1.1.1
- py39-cycler: 0.12.0
- py39-dateutil: 2.8.2
- py39-fonttools: 4.43.0
- py39-fs2: 2.4.16
- py39-gobject3: 3.42.2
- py39-importlib-resources: 6.1.0
- py39-kiwisolver: 1.4.4_1,1
- py39-lxml: 4.9.3
- py39-matplotlib: 3.7.1_3
- py39-numpy: 1.25.0_1,1
- py39-olefile: 0.46
- py39-packaging: 23.1
- py39-pillow: 10.0.1
- py39-pluggy: 1.3.0
- py39-pyparsing: 3.1.1
- py39-pytz: 2023.3,1
- py39-reportlab: 3.6.13
- py39-setuptools: 63.1.0_1
- py39-six: 1.16.0
- py39-tkinter: 3.9.18_7
- py39-tornado: 6.3.3
- py39-unicodedata2: 15.1.0
- py39-zipp: 3.17.0
- py39-zopfli: 0.2.3
- pygobject3-common: 3.42.2
- python3: 3_3
- qhull: 8.0.2_2,1
- rdkit: 2023.03.3_1
- shared-mime-info: 2.2_1
- sqlite3: 3.43.1,1
- suitesparse-amd: 3.2.0
- suitesparse-camd: 3.2.0
- suitesparse-ccolamd: 3.2.0
- suitesparse-cholmod: 4.2.0
- suitesparse-colamd: 3.2.0
- suitesparse-config: 7.2.0
- suitesparse-umfpack: 6.2.0
- tcl86: 8.6.13
- tiff: 4.4.0_2
- tk86: 8.6.13
- wayland: 1.22.0
- webkit2-gtk3: 2.34.6_8
- webp: 1.3.2
- woff2: 1.0.2_5
- wpebackend-fdo: 1.12.0
- wx30-gtk3: 3.0.5.1_3
- xkeyboard-config: 2.34_2
- xorg-fonts-truetype: 7.7_1
- xorgproto: 2023.2
-
- Number of packages to be installed: 182
-
- The process will require 2 GiB more space.
- 352 MiB to be downloaded.
- [spring] [1/182] Fetching duktape-lib-2.7.0.pkg: .......... done
- [spring] [2/182] Fetching qhull-8.0.2_2,1.pkg: .......... done
- [spring] [3/182] Fetching hyphen-2.8.8.pkg: .....
- .. done
- [spring] [4/182] Fetching freetype2-2.13.1.pkg: .......... done
- [spring] [5/182] Fetching libproxy-0.4.18.pkg: ........ done
- [spring] [6/182] Fetching libglvnd-1.6.0_2.pkg: ......... done
- [spring] [7/182] Fetching py39-matplotlib-3.7.1_3.pkg: ...
- ....... done
- [spring] [8/182] Fetching boost-all-1.83.0.pkg: . done
- [spring] [9/182] Fetching gobject-introspection-1.78.1,1.pkg: .
- ......... done
- [spring] [10/182] Fetching nettle-3.9.1.pkg: .......... done
- [spring] [11/182] Fetching py39-lxml-4.9.3.pkg: .
- ......... done
- [spring] [12/182] Fetching lcms2-2.15_2.pkg: ....
- ...... done
- [spring] [13/182] Fetching libnice-0.1.21_1.pkg: ........ done
- [spring] [14/182] Fetching adwaita-icon-theme-42.0.pkg: ......
- .... done
- [spring] [15/182] Fetching woff2-1.0.2_5.pkg: .......... done
- [spring] [16/182] Fetching suitesparse-cholmod-4.2.0.pkg: .......
- ... done
- [spring] [17/182] Fetching libthai-0.1.29.pkg: ....... done
- [spring] [18/182] Fetching polkit-123_1.pkg: .......... done
- [spring] [19/182] Fetching python3-3_3.pkg: .. done
- [spring] [20/182] Fetching gtk-update-icon-cache-3.24.31.pkg: ......... done
- [spring] [21/182] Fetching libXxf86vm-1.1.4_3.pkg: ... done
- [spring] [22/182] Fetching libmspack-0.11alpha.pkg: .......... done
- [spring] [23/182] Fetching openjpeg-2.5.0_1.pkg: .......... done
- [spring] [24/182] Fetching libXfixes-6.0.0.pkg: .. done
- [spring] [25/182] Fetching rdkit-2023.03.3_1.pkg: .
- ..
- ....
- ... done
- [spring] [26/182] Fetching py39-pluggy-1.3.0.pkg: ....... done
- [spring] [27/182] Fetching webkit2-gtk3-2.34.6_8.pkg: ....
- .....
- . done
- [spring] [28/182] Fetching openbabel-3.1.1.178.pkg: ........
- .. done
- [spring] [29/182] Fetching gdk-pixbuf2-2.42.10_1.pkg: ......... done
- [spring] [30/182] Fetching icu-73.2,1.pkg: ..
- ...
- ..... done
- [spring] [31/182] Fetching libgusb-0.3.10_1.pkg: ......... done
- [spring] [32/182] Fetching gnutls-3.7.9.pkg: .......... done
- [spring] [33/182] Fetching libwpe-1.12.0.pkg: ...... done
- [spring] [34/182] Fetching libepoll-shim-0.0.20230411.pkg: .... done
- [spring] [35/182] Fetching libX11-1.8.7,1.pkg: .......... done
- [spring] [36/182] Fetching libsoup-2.74.3.pkg: .......... done
- [spring] [37/182] Fetching giflib-5.2.1.pkg: .......... done
- [spring] [38/182] Fetching xorgproto-2023.2.pkg: ........ done
- [spring] [39/182] Fetching libXtst-1.2.3_2.pkg: .. done
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- [spring] [41/182] Fetching libXft-2.3.7.pkg: ......... done
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- ....... done
- [spring] [43/182] Fetching cairo-1.17.4_2,3.pkg: .......... done
- [spring] [44/182] Fetching graphite2-1.3.14.pkg: ...... done
- [spring] [45/182] Fetching shared-mime-info-2.2_1.pkg:
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- .... done
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- [spring] [51/182] Fetching gdbm-1.23.pkg: .......... done
- [spring] [52/182] Fetching avahi-app-0.8_1.pkg: ......... done
- [spring] [53/182] Fetching py39-fonttools-4.43.0.pkg: ......
- .... done
- [spring] [54/182] Fetching enchant2-2.2.15_3.pkg: ...... done
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- [spring] [56/182] Fetching dbus-1.14.10_1,1.pkg: .......... done
- [spring] [57/182] Fetching py39-tornado-6.3.3.pkg: .......... done
- [spring] [58/182] Fetching py39-contourpy-1.1.1.pkg: ........ done
- [spring] [59/182] Fetching json-glib-1.8.0.pkg:
- .......... done
- [spring] [60/182] Fetching libsecret-0.20.5_2.pkg: .........
- . done
- [spring] [61/182] Fetching libunwind-20211201_2.pkg: ...... done
- [spring] [62/182] Fetching brotli-1.1.0,1.pkg: .......... done
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- [spring] [67/182] Fetching gcc12-12.2.0_6.pkg:
- .
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- . done
- [spring] [68/182] Fetching py39-appdirs-1.4.4.pkg: ... done
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- [spring] [79/182] Fetching font-misc-meltho-1.0.3_5.pkg: .......... done
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- [spring] [81/182] Fetching iso-codes-4.15.0.pkg: ..
- ........ done
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- [spring] [83/182] Fetching tiff-4.4.0_2.pkg: ......
- .... done
- [spring] [84/182] Fetching tcl86-8.6.13.pkg: .........
- . done
- [spring] [85/182] Fetching xorg-fonts-truetype-7.7_1.pkg: . done
- [spring] [86/182] Fetching dejavu-2.37_3.pkg: .......... done
- [spring] [87/182] Fetching libnotify-0.8.2.pkg: ........ done
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- [spring] [89/182] Fetching openblas-0.3.20,2.pkg: ...
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- ..... done
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- [spring] [92/182] Fetching glib-networking-2.78.0.pkg: .......... done
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- ..... done
- [spring] [97/182] Fetching graphene-1.10.8.pkg: .......... done
- [spring] [98/182] Fetching librsvg2-rust-2.56.4.pkg: .........
- . done
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- Checking integrity...
- done (0 conflicting)
- [spring] [1/182] Installing xorgproto-2023.2...
- [spring] [1/182] Extracting xorgproto-2023.2: .......... done
- [spring] [2/182] Installing libXau-1.0.9...
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- [spring] [5/182] Installing libxcb-1.15_1...
- [spring] [5/182] Extracting libxcb-1.15_1: ......
- .... done
- [spring] [6/182] Installing mpfr-4.2.1,1...
- [spring] [6/182] Extracting mpfr-4.2.1,1: .......... done
- [spring] [7/182] Installing libX11-1.8.7,1...
- [spring] [7/182] Extracting libX11-1.8.7,1: ......
- .... done
- [spring] [8/182] Installing brotli-1.1.0,1...
- [spring] [8/182] Extracting brotli-1.1.0,1: .......... done
- [spring] [9/182] Installing png-1.6.40...
- [spring] [9/182] Extracting png-1.6.40: .......... done
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- [spring] [11/182] Installing binutils-2.40_4,1...
- [spring] [11/182] Extracting binutils-2.40_4,1:
- .....
-
- pkg: Fail to chown /lib/ldscripts/elf64_ia64.xdce:Bad file descriptor
- [spring] [11/182] Extracting binutils-2.40_4,1... done
[ERROR] System package install failed with exit code 3 at command:
sudo pkg install -y autoconf boost-all openbabel python3 rdkit
[ERROR] These packages are still missing: autoconf boost-all openbabel python3 rdkit
[NOTE] You can retry with '--assume-depexts' to skip this check, or run 'opam option depext=false' to permanently disable handling of system packages.
'opam install -vy lbvs_consent.2.2.0' failed.
jail: /usr/bin/su -l opam -c cd '/' && env OCAMLPARAM='warn-error=+8,_' OPAMCRITERIA='+removed' OPAMEXTERNALSOLVER='builtin-0install' OPAMUTF8='never' OPAMPRECISETRACKING='1' '/usr/bin/env' 'bash' '-c' '
opam remove -y "lbvs_consent.2.2.0"
opam install -vy "lbvs_consent.2.2.0"
res=$?
if [ $res = 31 ]; then
if opam show -f x-ci-accept-failures: "lbvs_consent.2.2.0" | grep -q '\''"freebsd"'\''; then
echo "This package failed and has been disabled for CI using the '\''x-ci-accept-failures'\'' field."
exit 69
fi
fi
exit $res
': failed
"jail" "-c" "name=obuilder_43243_26986" "mount.fstab=/tmp/obuilder-jail-e65a36/fstab" "mount.devfs" "path=/obuilder/result/41764226feb2b4415cbdef568f4c72c59481bd38a2a29ee75da4e205dc5a28bc/rootfs" "host=inherit" "ip6=inherit" "ip4=inherit" "command=/usr/bin/su" "-l" "opam" "-c" "cd '/' && env OCAMLPARAM='warn-error=+8,_' OPAMCRITERIA='+removed' OPAMEXTERNALSOLVER='builtin-0install' OPAMUTF8='never' OPAMPRECISETRACKING='1' '/usr/bin/env' 'bash' '-c' '
opam remove -y "lbvs_consent.2.2.0"
opam install -vy "lbvs_consent.2.2.0"
res=$?
if [ $res = 31 ]; then
if opam show -f x-ci-accept-failures: "lbvs_consent.2.2.0" | grep -q '\''"freebsd"'\''; then
echo "This package failed and has been disabled for CI using the '\''x-ci-accept-failures'\'' field."
exit 69
fi
fi
exit $res
'" failed with exit status 1
Failed: Build failed
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