Building on spring (from freebsd) 2023-12-21 09:32.39 ---> using "77d5fe31836124b4684d554707425c4fde23f9ef3df0a804431a47419573778d" from cache /: (user (uid 1000) (gid 1000)) /: (env OPAMPRECISETRACKING 1) /: (env OPAMUTF8 never) /: (env OPAMEXTERNALSOLVER builtin-0install) /: (env OPAMCRITERIA +removed) /: (run (shell "sudo ln -f /usr/local/bin/opam-dev /usr/local/bin/opam")) 2023-12-21 09:32.39 ---> using "a2b22593046b56fadc85e22b0da7b84e903c1f5aa4d42a7c481121ceec28b31f" from cache /: (run (network host) (shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q 1a01639f743228bcd2b03a3a610c8c2b88bbd944")) 2023-12-21 09:32.39 ---> using "72199d53c0b595df297bc2227ce055f52538676a291f87a306ae37772100afa6" from cache /: (run (shell "rm -rf ~/.opam && opam init -ya --bare ~/opam-repository")) No configuration file found, using built-in defaults. Checking for available remotes: rsync and local, git. - you won't be able to use mercurial repositories unless you install the hg command on your system. - you won't be able to use darcs repositories unless you install the darcs command on your system. <><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><> [default] Initialised User configuration: /usr/home/opam/.profile is already up-to-date. [NOTE] Make sure that /usr/home/opam/.profile is well sourced in your ~/.bashrc. 2023-12-21 09:32.39 ---> using "114d39e806f0d07b325dbb8c4af00f55d2c599ac3bcff02950946fbe65c53bc2" from cache /: (run (cache (opam-archives (target /usr/home/opam/.opam/download-cache))) (network host) (shell "opam switch create --repositories=default '4.14.1' 'ocaml-base-compiler.4.14.1'")) <><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><> Switch invariant: ["ocaml-base-compiler" {= "4.14.1"}] <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> installed base-bigarray.base -> installed base-threads.base -> installed base-unix.base -> installed ocaml-options-vanilla.1 -> retrieved ocaml-base-compiler.4.14.1 (https://github.com/ocaml/ocaml/archive/4.14.1.tar.gz) -> installed ocaml-base-compiler.4.14.1 -> installed ocaml-config.2 -> installed ocaml.4.14.1 Done. # Run eval $(opam env --switch=4.14.1) to update the current shell environment 2023-12-21 09:32.39 ---> using "a7deb3442f54c34f8447a3b41e4677563cce20d62a64cade735bb8db2513b024" from cache /: (run (network host) (shell "opam update --depexts")) [WARNING] Unknown update command for bsd, skipping system update 2023-12-21 09:32.39 ---> using "699489a2955f14cb38fe708a60ae2daf62154644aa69855ce768335403d61435" from cache /: (env OCAMLPARAM warn-error=+8,_) /: (run (cache (opam-archives (target /usr/home/opam/.opam/download-cache))) (network host) (shell "\ \nopam remove -y \"oranger.4.3.5\"\ \nopam install -vy \"oranger.4.3.5\"\ \nres=$?\ \nif [ $res = 31 ]; then\ \n if opam show -f x-ci-accept-failures: \"oranger.4.3.5\" | grep -q '\"freebsd\"'; then\ \n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\ \n exit 69\ \n fi\ \nfi\ \n\ \n\ \nexit $res\ \n")) [NOTE] oranger.4.3.5 is not installed. Nothing to do. The following actions will be performed: === install 45 packages - install base-bytes base [required by dokeysto] - install batteries 3.7.2 [required by oranger] - install bst 7.0.1 [required by molenc] - install camlp-streams 5.0.1 [required by batteries] - install camltc 0.9.8 [required by dokeysto_camltc] - install conf-autoconf 0.1 [required by cpu, stdcompat] - install conf-bash 1 [required by camltc] - install conf-cmake 1 [required by oranger] - install conf-graphviz 0.1 [required by molenc] - install conf-python-3 9.0.0 [required by molenc] - install conf-rdkit 1 [required by molenc] - install conf-which 1 [required by conf-graphviz] - install cpm 12.2.0 [required by oranger] - install cppo 1.6.9 [required by lwt] - install cpu 2.0.0 [required by parany] - install csexp 1.5.2 [required by dune-configurator] - install dokeysto 4.0.1 [required by dokeysto_camltc] - install dokeysto_camltc 4.0.0 [required by molenc] - install dolog 6.0.0 [required by oranger] - install dune 3.12.1 [required by oranger] - install dune-configurator 3.12.1 [required by extunix] - install extunix 0.4.1 [required by dokeysto] - install line_oriented 1.3.0 [required by oranger] - install logs 0.7.0 [required by camltc] - install lwt 5.7.0 [required by camltc] - install minicli 5.0.2 [required by oranger] - install molenc 16.13.0 [required by oranger] - install num 1.5 [required by batteries] - install ocaml-compiler-libs v0.12.4 [required by ppxlib] - install ocamlbuild 0.14.2 [required by logs] - install ocamlfind 1.9.6 [required by batteries] - install ocamlgraph 2.1.0 [required by molenc] - install ocplib-endian 1.2 [required by lwt] - install oranger 4.3.5 - install parany 14.0.1 [required by oranger] - install ppx_derivers 1.2.1 [required by ppxlib] - install ppxlib 0.31.0 [required by extunix] - install pyml 20231101 [required by molenc] - install re 1.11.0 [required by oranger] - install seq base [required by re] - install sexplib0 v0.16.0 [required by ppxlib] - install stdcompat 19 [required by pyml] - install stdlib-shims 0.3.0 [required by ocamlgraph] - install topkg 1.0.7 [required by logs] - install vector3 1.0.0 [required by molenc] The following system packages will first need to be installed: autoconf devel/cmake graphics/graphviz python3 rdkit <><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><> opam believes some required external dependencies are missing. opam can: > 1. Run pkg to install them (may need root/sudo access) 2. Display the recommended pkg command and wait while you run it manually (e.g. in another terminal) 3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable 4. Abort the installation [1/2/3/4] 1 + /usr/local/bin/sudo "pkg" "install" "-y" "autoconf" "devel/cmake" "graphics/graphviz" "python3" "rdkit" - Updating FreeBSD repository catalogue... - [spring] Fetching packagesite.pkg: - . - . - . - . - . - . - . - . - . - . done - Processing entries: . - .. - . - .. - . - .. - . done - FreeBSD repository update completed. 33981 packages processed. - All repositories are up to date. - The following 115 package(s) will be affected (of 0 checked): - - New packages to be INSTALLED: - adobe-cmaps: 20051217_4 - autoconf: 2.71 - autoconf-switch: 20220527 - binutils: 2.40_4,1 - boost-libs: 1.83.0 - brotli: 1.1.0,1 - cairo: 1.17.4_2,3 - cmake: 3.26.1 - cmake-core: 3.26.1_3 - cmake-doc: 3.26.1_1 - cmake-man: 3.26.1 - coordgenlibs: 3.0.2 - dejavu: 2.37_3 - encodings: 1.0.5,1 - font-bh-ttf: 1.0.3_5 - font-misc-ethiopic: 1.0.4 - font-misc-meltho: 1.0.3_5 - fontconfig: 2.14.2,1 - freetype2: 2.13.1 - fribidi: 1.0.13 - gcc12: 12.2.0_6 - giflib: 5.2.1 - glib: 2.78.3,2 - gmp: 6.3.0 - graphite2: 1.3.14 - graphviz: 8.1.0_1 - harfbuzz: 8.2.2 - icu: 73.2,1 - jbigkit: 2.1_1 - jpeg-turbo: 3.0.0 - jsoncpp: 1.9.5 - lcms2: 2.15_2 - libICE: 1.1.0_2,1 - libSM: 1.2.3_1,1 - libX11: 1.8.7,1 - libXScrnSaver: 1.2.4 - libXau: 1.0.9 - libXaw: 1.0.14,2 - libXdmcp: 1.1.3 - libXext: 1.3.4,1 - libXft: 2.3.7 - libXmu: 1.1.3,1 - libXpm: 3.5.17 - libXrender: 0.9.10_2 - libXt: 1.2.1,1 - libdatrie: 0.2.13_1 - libdeflate: 1.19 - libfontenc: 1.1.7 - libgcrypt: 1.10.2 - libgd: 2.3.3_7,1 - libglvnd: 1.6.0_2 - libgpg-error: 1.47 - libimagequant: 4.2.1 - libltdl: 2.4.7 - libraqm: 0.10.1 - libthai: 0.1.29 - libuv: 1.46.0 - libxcb: 1.15_1 - libxml2: 2.10.4_1 - libxslt: 1.1.37 - m4: 1.4.19,1 - maeparser: 1.3.1_2 - mkfontscale: 1.2.1 - mpc: 1.3.1_1 - mpfr: 4.2.1,1 - openblas: 0.3.20,2 - openjpeg: 2.5.0_1 - pango: 1.50.14 - pixman: 0.42.2 - png: 1.6.40 - py39-appdirs: 1.4.4 - py39-boost-libs: 1.83.0 - py39-brotli: 1.1.0 - py39-certifi: 2023.7.22 - py39-contourpy: 1.1.1 - py39-cycler: 0.12.0 - py39-dateutil: 2.8.2 - py39-fonttools: 4.43.0 - py39-fs2: 2.4.16 - py39-importlib-resources: 6.1.0 - py39-kiwisolver: 1.4.4_1,1 - py39-lxml: 4.9.3 - py39-matplotlib: 3.7.1_3 - py39-numpy: 1.25.0_1,1 - py39-olefile: 0.46 - py39-packaging: 23.1 - py39-pillow: 10.0.1 - py39-pluggy: 1.3.0 - py39-pyparsing: 3.1.1 - py39-pytz: 2023.3,1 - py39-reportlab: 3.6.13 - py39-setuptools: 63.1.0_1 - py39-six: 1.16.0 - py39-tkinter: 3.9.18_7 - py39-tornado: 6.3.3 - py39-unicodedata2: 15.1.0 - py39-zipp: 3.17.0 - py39-zopfli: 0.2.3 - python3: 3_3 - qhull: 8.0.2_2,1 - rdkit: 2023.03.3_1 - rhash: 1.4.4 - suitesparse-amd: 3.2.0 - suitesparse-camd: 3.2.0 - suitesparse-ccolamd: 3.2.0 - suitesparse-cholmod: 4.2.0 - suitesparse-colamd: 3.2.0 - suitesparse-config: 7.2.0 - suitesparse-umfpack: 6.2.0 - tcl86: 8.6.13 - tiff: 4.4.0_2 - tk86: 8.6.13 - webp: 1.3.2 - xorg-fonts-truetype: 7.7_1 - xorgproto: 2023.2 - - Number of packages to be installed: 115 - - The process will require 1 GiB more space. - 242 MiB to be downloaded. - [spring] [1/115] Fetching png-1.6.40.pkg: - ......... - . done - [spring] [2/115] Fetching qhull-8.0.2_2,1.pkg: ....... - ... done - [spring] [3/115] Fetching libxcb-1.15_1.pkg: . - ... - .. - ... - . done - [spring] [4/115] Fetching libdatrie-0.2.13_1.pkg: ......... done - [spring] [5/115] Fetching libraqm-0.10.1.pkg: ....... done - [spring] [6/115] Fetching freetype2-2.13.1.pkg: .. - .... - . - ... done - [spring] [7/115] Fetching jpeg-turbo-3.0.0.pkg: .. - ........ done - [spring] [8/115] Fetching libXt-1.2.1,1.pkg: - ........ - .. done - [spring] [9/115] Fetching cmake-man-3.26.1.pkg: ... - .... - ... done - [spring] [10/115] Fetching suitesparse-camd-3.2.0.pkg: .......... done - [spring] [11/115] Fetching libglvnd-1.6.0_2.pkg: . - .... - ... done - [spring] [12/115] Fetching py39-kiwisolver-1.4.4_1,1.pkg: ....... done - [spring] [13/115] Fetching py39-matplotlib-3.7.1_3.pkg: - . - . - . - . - . - . - . - . - . - . done - [spring] [14/115] Fetching libxslt-1.1.37.pkg: .......... done - [spring] [15/115] Fetching libuv-1.46.0.pkg: . - ......... done - [spring] [16/115] Fetching boost-libs-1.83.0.pkg: - . - . - . - . - . - . - . - . - . - . done - [spring] [17/115] Fetching py39-zipp-3.17.0.pkg: ...... done - [spring] [18/115] Fetching py39-lxml-4.9.3.pkg: - .. - . - . - . - . - . - . - .. done - [spring] [19/115] Fetching lcms2-2.15_2.pkg: - .. - ... - .. - .. - . done - [spring] [20/115] Fetching libXaw-1.0.14,2.pkg: ..... - ..... done - [spring] [21/115] Fetching libthai-0.1.29.pkg: . - ......... done - [spring] [22/115] Fetching py39-olefile-0.46.pkg: ....... - . done - [spring] [23/115] Fetching suitesparse-cholmod-4.2.0.pkg: ... - .... - . - . - . done - [spring] [24/115] Fetching python3-3_3.pkg: .. done - [spring] [25/115] Fetching mkfontscale-1.2.1.pkg: ....... done - [spring] [26/115] Fetching cmake-core-3.26.1_3.pkg: - . - . - . - . - . - . - . - . - . - . done - [spring] [27/115] Fetching libdeflate-1.19.pkg: .......... done - [spring] [28/115] Fetching py39-numpy-1.25.0_1,1.pkg: - . - . - . - . - . - . - . - . - . - . done - [spring] [29/115] Fetching fribidi-1.0.13.pkg: ......... done - [spring] [30/115] Fetching openjpeg-2.5.0_1.pkg: ...... - .... done - [spring] [31/115] Fetching maeparser-1.3.1_2.pkg: .......... done - [spring] [32/115] Fetching py39-pillow-10.0.1.pkg: ... - ... - .... done - [spring] [33/115] Fetching py39-fs2-2.4.16.pkg: .......... done - [spring] [34/115] Fetching rdkit-2023.03.3_1.pkg: - . - . - . - . - . - . - . - . - . - . done - [spring] [35/115] Fetching py39-pluggy-1.3.0.pkg: ........ done - [spring] [36/115] Fetching libxml2-2.10.4_1.pkg: - . - ... - .. - .. - .. done - [spring] [37/115] Fetching py39-cycler-0.12.0.pkg: .... done - [spring] [38/115] Fetching libgd-2.3.3_7,1.pkg: ......... - . done - [spring] [39/115] Fetching icu-73.2,1.pkg: - . - . - . - . - . - . - . - . - . - . done - [spring] [40/115] Fetching libXScrnSaver-1.2.4.pkg: ... done - [spring] [41/115] Fetching libimagequant-4.2.1.pkg: - ..... - ..... done - [spring] [42/115] Fetching font-misc-ethiopic-1.0.4.pkg: ........ - .. done - [spring] [43/115] Fetching libX11-1.8.7,1.pkg: - . - . - . - . - . - . - .. - . - . done - [spring] [44/115] Fetching giflib-5.2.1.pkg: ......... done - [spring] [45/115] Fetching libXrender-0.9.10_2.pkg: .... - ...... done - [spring] [46/115] Fetching suitesparse-umfpack-6.2.0.pkg: - .. - ... - . - ... - . done - [spring] [47/115] Fetching xorgproto-2023.2.pkg: .......... done - [spring] [48/115] Fetching suitesparse-ccolamd-3.2.0.pkg: ... - ..... done - [spring] [49/115] Fetching py39-brotli-1.1.0.pkg: .... done - [spring] [50/115] Fetching libXft-2.3.7.pkg: .......... done - [spring] [51/115] Fetching cmake-doc-3.26.1_1.pkg: - . - . - . - . - . - . - . - . - . - . done - [spring] [52/115] Fetching webp-1.3.2.pkg: ... - ....... done - [spring] [53/115] Fetching cairo-1.17.4_2,3.pkg: - ... - . - .. - ... - . done - [spring] [54/115] Fetching py39-reportlab-3.6.13.pkg: - . - . - . - . - . - . - . - . - . - . done - [spring] [55/115] Fetching py39-pyparsing-3.1.1.pkg: .... - ...... done - [spring] [56/115] Fetching graphite2-1.3.14.pkg: ........ - .. done - [spring] [57/115] Fetching coordgenlibs-3.0.2.pkg: ........ - . - . done - [spring] [58/115] Fetching encodings-1.0.5,1.pkg: - .... - .. - .... done - [spring] [59/115] Fetching harfbuzz-8.2.2.pkg: . - . - . - .. - . - . - . - . - . done - [spring] [60/115] Fetching suitesparse-amd-3.2.0.pkg: - ......... - . done - [spring] [61/115] Fetching graphviz-8.1.0_1.pkg: - . - . - . - . - . - . - . - . - . - . done - [spring] [62/115] Fetching py39-fonttools-4.43.0.pkg: - . - . - .. - .. - . - . - . - . done - [spring] [63/115] Fetching adobe-cmaps-20051217_4.pkg: . - . - .. - . - .. - . - . - . done - [spring] [64/115] Fetching libfontenc-1.1.7.pkg: ....... done - [spring] [65/115] Fetching py39-tornado-6.3.3.pkg: - . - .... - ... - . - . done - [spring] [66/115] Fetching py39-contourpy-1.1.1.pkg: . - ...... - ... done - [spring] [67/115] Fetching jsoncpp-1.9.5.pkg: .. - ..... - ... done - [spring] [68/115] Fetching py39-unicodedata2-15.1.0.pkg: - .. - ... - ..... done - [spring] [69/115] Fetching libgcrypt-1.10.2.pkg: - .. - . - . - . - . - . - ... done - [spring] [70/115] Fetching font-bh-ttf-1.0.3_5.pkg: - .... - . - .. - ... done - [spring] [71/115] Fetching tk86-8.6.13.pkg: - .. - . - . - . - .. - . - . - . done - [spring] [72/115] Fetching pango-1.50.14.pkg: - . - . - . - . - . - . - .. - . - . done - [spring] [73/115] Fetching brotli-1.1.0,1.pkg: .. - .... - ... - . done - [spring] [74/115] Fetching libgpg-error-1.47.pkg: . - ... - . - .. - . - . - . done - [spring] [75/115] Fetching py39-packaging-23.1.pkg: .... - .... done - [spring] [76/115] Fetching gmp-6.3.0.pkg: .. - . - .. - ... - .. done - [spring] [77/115] Fetching py39-dateutil-2.8.2.pkg: - .. - .... - .... done - [spring] [78/115] Fetching mpfr-4.2.1,1.pkg: . - . - .... - .... done - [spring] [79/115] Fetching suitesparse-config-7.2.0.pkg: ........ done - [spring] [80/115] Fetching libXext-1.3.4,1.pkg: ..... - ... done - [spring] [81/115] Fetching suitesparse-colamd-3.2.0.pkg: ....... done - [spring] [82/115] Fetching py39-six-1.16.0.pkg: .... done - [spring] [83/115] Fetching py39-tkinter-3.9.18_7.pkg: ....... done - [spring] [84/115] Fetching cmake-3.26.1.pkg: . done - [spring] [85/115] Fetching py39-setuptools-63.1.0_1.pkg: - ... - . - . - .. - .. - . done - [spring] [86/115] Fetching py39-pytz-2023.3,1.pkg: .... - ...... done - [spring] [87/115] Fetching libXau-1.0.9.pkg: .... done - [spring] [88/115] Fetching libICE-1.1.0_2,1.pkg: ... - ...... done - [spring] [89/115] Fetching libXmu-1.1.3,1.pkg: ..... - ..... done - [spring] [90/115] Fetching gcc12-12.2.0_6.pkg: - . - . - - pkg: cached package gcc12-12.2.0_6: missing or size mismatch, fetching from remote - [spring] [91/115] Fetching gcc12-12.2.0_6.pkg: - - pkg: cached package gcc12-12.2.0_6: missing or size mismatch, cannot continue - Consider running 'pkg update -f' [ERROR] System package install failed with exit code 3 at command: sudo pkg install -y autoconf devel/cmake graphics/graphviz python3 rdkit [ERROR] These packages are still missing: autoconf devel/cmake graphics/graphviz python3 rdkit [NOTE] You can retry with '--assume-depexts' to skip this check, or run 'opam option depext=false' to permanently disable handling of system packages. 'opam install -vy oranger.4.3.5' failed. jail: /usr/bin/su -l opam -c cd '/' && env OCAMLPARAM='warn-error=+8,_' OPAMCRITERIA='+removed' OPAMEXTERNALSOLVER='builtin-0install' OPAMUTF8='never' OPAMPRECISETRACKING='1' '/usr/bin/env' 'bash' '-c' ' opam remove -y "oranger.4.3.5" opam install -vy "oranger.4.3.5" res=$? if [ $res = 31 ]; then if opam show -f x-ci-accept-failures: "oranger.4.3.5" | grep -q '\''"freebsd"'\''; then echo "This package failed and has been disabled for CI using the '\''x-ci-accept-failures'\'' field." exit 69 fi fi exit $res ': failed "jail" "-c" "name=obuilder_43243_7224" "mount.fstab=/tmp/obuilder-jail-d00b78/fstab" "mount.devfs" "path=/obuilder/result/5edf8ccc99f2ffafb59ea7331deedbf3788398b71fe83880a2cf2e91a40a75fa/rootfs" "host=inherit" "ip6=inherit" "ip4=inherit" "command=/usr/bin/su" "-l" "opam" "-c" "cd '/' && env OCAMLPARAM='warn-error=+8,_' OPAMCRITERIA='+removed' OPAMEXTERNALSOLVER='builtin-0install' OPAMUTF8='never' OPAMPRECISETRACKING='1' '/usr/bin/env' 'bash' '-c' ' opam remove -y "oranger.4.3.5" opam install -vy "oranger.4.3.5" res=$? if [ $res = 31 ]; then if opam show -f x-ci-accept-failures: "oranger.4.3.5" | grep -q '\''"freebsd"'\''; then echo "This package failed and has been disabled for CI using the '\''x-ci-accept-failures'\'' field." exit 69 fi fi exit $res '" failed with exit status 1 Failed: Build failed